Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : BcepF1 | Genbank acc : NC_009015 | Aclame index mge :1544

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 127

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	117	lcl\|Aclame:protein:vir:99576\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Portal	124	lcl\|Aclame:protein:vir:99563\|NCBI_annot:minor	HHsearch (proba=100.00%)
TermL	127	lcl\|Aclame:protein:vir:99572\|NCBI_annot:TerL-like	Blast (e-value=0)
MTP	NOT FOUND
Sheath	111	lcl\|Aclame:protein:vir:99586\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad1	115	lcl\|Aclame:protein:vir:99570\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	114	lcl\|Aclame:protein:vir:99571\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	112	lcl\|Aclame:protein:vir:99546\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	113	lcl\|Aclame:protein:vir:99607\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:99576 protein:vir:96079 protein:vir:107732	BcepF1 F8 BcepB1A	100 % 61 % 42 %
Portal	protein:vir:99563 protein:vir:96068 protein:vir:107742	BcepF1 F8 BcepB1A	100 % 58 % 38 %
TermL	protein:vir:99572 protein:vir:96067 protein:vir:96782	BcepF1 F8 phiHSIC	100 % 67 % 22 %
Sheath	protein:vir:99586 protein:vir:96104 protein:vir:107720	BcepF1 F8 BcepB1A	100 % 59 % 37 %
Ad1	protein:vir:99570 protein:vir:96108 protein:vir:107756	BcepF1 F8 BcepB1A	100 % 53 % 44 %
Hc1	protein:vir:99571 protein:vir:96107 protein:vir:107716	BcepF1 F8 BcepB1A	100 % 48 % 35 %
Ne1	protein:vir:99546 protein:vir:96105 protein:vir:5257	BcepF1 F8 Aaphi23	100 % 57 % 31 %
Tc1	protein:vir:99607 protein:vir:96106 protein:vir:107715	BcepF1 F8 BcepB1A	100 % 37 % 23 %