Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 7 lcl|NC_020489.1_cdsid_YP_007518389.1 HHsearch (proba=100.00%)
Portal 5 lcl|NC_020489.1_cdsid_YP_007518387.1 HHsearch (proba=100.00%)
TermL 4 lcl|NC_020489.1_cdsid_YP_007518386.1 Blast (e-value=4e-91)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 10 lcl|NC_020489.1_cdsid_YP_007518392.1 HHsearch (proba=100.00%)
Hc1 11 lcl|NC_020489.1_cdsid_YP_007518393.1 HHsearch (proba=99.95%)
Ne1 13 lcl|NC_020489.1_cdsid_YP_007518395.1 HHsearch (proba=99.95%)
Tc1 14 lcl|NC_020489.1_cdsid_YP_007518396.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:80376
protein:vir:1433
protein:vir:5739
phi644-2
phiE125
PY54
43 %
42 %
37 %
Portal protein:vir:4454
protein:vir:483
protein:vir:100150
ST64B
P27
phi1026b
32 %
32 %
31 %
TermL protein:vir:93598
protein:vir:100250
protein:vir:10361
phi 4795
Bcep176
Xp10
37 %
36 %
35 %
Ad1 protein:vir:80320
protein:vir:1435
protein:vir:100103
phi644-2
phiE125
phi1026b
24 %
24 %
25 %
Hc1 protein:vir:1890
protein:vir:4343
protein:vir:100134
HK022
D3
phi1026b
34 %
29 %
27 %
Ne1 protein:vir:4347
protein:vir:94538
protein:vir:94108
D3
phiJL-1
96
24 %
22 %
22 %
Tc1 protein:vir:96260
protein:vir:105892
protein:vir:94096
ROSA
phiETA3
96
23 %
23 %
23 %