Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : RcapNL | Genbank acc : NC_020489

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 3) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 64

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|NC_020489.1_cdsid_YP_007518389.1	HHsearch (proba=100.00%)
Portal	5	lcl\|NC_020489.1_cdsid_YP_007518387.1	HHsearch (proba=100.00%)
TermL	4	lcl\|NC_020489.1_cdsid_YP_007518386.1	Blast (e-value=4e-91)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	10	lcl\|NC_020489.1_cdsid_YP_007518392.1	HHsearch (proba=100.00%)
Hc1	11	lcl\|NC_020489.1_cdsid_YP_007518393.1	HHsearch (proba=99.95%)
Ne1	13	lcl\|NC_020489.1_cdsid_YP_007518395.1	HHsearch (proba=99.95%)
Tc1	14	lcl\|NC_020489.1_cdsid_YP_007518396.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:80376 protein:vir:1433 protein:vir:5739	phi644-2 phiE125 PY54	43 % 42 % 37 %
Portal	protein:vir:4454 protein:vir:483 protein:vir:100150	ST64B P27 phi1026b	32 % 32 % 31 %
TermL	protein:vir:93598 protein:vir:100250 protein:vir:10361	phi 4795 Bcep176 Xp10	37 % 36 % 35 %
Ad1	protein:vir:80320 protein:vir:1435 protein:vir:100103	phi644-2 phiE125 phi1026b	24 % 24 % 25 %
Hc1	protein:vir:1890 protein:vir:4343 protein:vir:100134	HK022 D3 phi1026b	34 % 29 % 27 %
Ne1	protein:vir:4347 protein:vir:94538 protein:vir:94108	D3 phiJL-1 96	24 % 22 % 22 %
Tc1	protein:vir:96260 protein:vir:105892 protein:vir:94096	ROSA phiETA3 96	23 % 23 % 23 %