Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiJL-1 | Genbank acc : NC_006936 | Aclame index mge :1510

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 46

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	16	lcl\|Aclame:protein:vir:94528\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	13	lcl\|Aclame:protein:vir:94546\|NCBI_annot:minor	HHsearch (proba=100.00%)
TermL	12	lcl\|Aclame:protein:vir:94525\|NCBI_annot:putative	Blast (e-value=0)
MTP	22	lcl\|Aclame:protein:vir:94505\|NCBI_annot:major	Blast (e-value=1e-115)
Sheath	NOT FOUND
Ad1	18	lcl\|Aclame:protein:vir:94507\|NCBI_annot:putative	HHsearch (proba=100.00%)
Hc1	19	lcl\|Aclame:protein:vir:94514\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	20	lcl\|Aclame:protein:vir:94538\|NCBI_annot:putative	HHsearch (proba=100.00%)
Tc1	21	lcl\|Aclame:protein:vir:94547\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:94528 protein:vir:98871 protein:vir:4786	phiJL-1 BCJA1c MM1	100 % 48 % 43 %
Portal	protein:vir:94546 protein:vir:95806 protein:vir:106639	phiJL-1 SMP 187	100 % 38 % 36 %
TermL	protein:vir:94525 protein:vir:97165 protein:vir:95761	phiJL-1 85 SMP	100 % 43 % 42 %
MTP	protein:vir:94505 protein:vir:9932 protein:vir:5980	phiJL-1 315.6 SPP1	100 % 39 % 38 %
Ad1	protein:vir:94507 protein:vir:9928 protein:vir:106596	phiJL-1 315.6 187	100 % 36 % 33 %
Hc1	protein:vir:94514 protein:vir:9929 protein:vir:106629	phiJL-1 315.6 187	100 % 23 % 22 %
Ne1	protein:vir:94538 protein:vir:3617 protein:vir:105330	phiJL-1 TP901-1 PH15	100 % 32 % 29 %
Tc1	protein:vir:94547 protein:vir:9931 protein:vir:3972	phiJL-1 315.6 ul36	100 % 18 % 20 %