Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 7 lcl|NC_019722.1_cdsid_YP_007112483.1 HHsearch (proba=100.00%)
Portal 4 lcl|NC_019722.1_cdsid_YP_007112480.1 HHsearch (proba=100.00%)
TermL 2 lcl|NC_019722.1_cdsid_YP_007112478.1 Blast (e-value=0)
MTP 23 lcl|NC_019722.1_cdsid_YP_007112499.1 Blast (e-value=5e-84)
Sheath 22 lcl|NC_019722.1_cdsid_YP_007112498.1 HHsearch (proba=100.00%)
Ad1 3 lcl|NC_019722.1_cdsid_YP_007112479.1 HHsearch (proba=97.71%)
Hc1 NOT FOUND
Ne1 9 lcl|NC_019722.1_cdsid_YP_007112485.1 HHsearch (proba=100.00%)
Tc1 10 lcl|NC_019722.1_cdsid_YP_007112486.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Tc1<->Ad1 7 4
Ne1<->Ad1 6 4


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:10324
protein:vir:95258
protein:vir:6378
VHML
Felix 01
BcepNazgul
99 %
29 %
14 %
Portal protein:vir:10321
protein:vir:79538
protein:vir:96738
VHML
cdtI
VP882
97 %
23 %
21 %
TermL protein:vir:10320
protein:vir:387
protein:vir:3418
VHML
N15
lambda
100 %
30 %
29 %
MTP protein:vir:10337
protein:vir:1846
protein:vir:79133
VHML
186
RSA1
96 %
39 %
38 %
Sheath protein:vir:10336
protein:vir:79141
protein:vir:1172
VHML
RSA1
phi CTX
97 %
42 %
41 %
Ad1 protein:vir:3419
protein:vir:388
lambda
N15
27 %
22 %
Ne1 protein:vir:10326
protein:vir:96763
protein:vir:3427
VHML
VP882
lambda
98 %
34 %
23 %
Tc1 protein:vir:10327
protein:vir:96764
protein:vir:1994
VHML
VP882
Mu
100 %
22 %
14 %