Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : vB_VpaM_MAR | Genbank acc : NC_019722

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 6) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 62

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|NC_019722.1_cdsid_YP_007112483.1	HHsearch (proba=100.00%)
Portal	4	lcl\|NC_019722.1_cdsid_YP_007112480.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_019722.1_cdsid_YP_007112478.1	Blast (e-value=0)
MTP	23	lcl\|NC_019722.1_cdsid_YP_007112499.1	Blast (e-value=5e-84)
Sheath	22	lcl\|NC_019722.1_cdsid_YP_007112498.1	HHsearch (proba=100.00%)
Ad1	3	lcl\|NC_019722.1_cdsid_YP_007112479.1	HHsearch (proba=97.71%)
Hc1	NOT FOUND
Ne1	9	lcl\|NC_019722.1_cdsid_YP_007112485.1	HHsearch (proba=100.00%)
Tc1	10	lcl\|NC_019722.1_cdsid_YP_007112486.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Tc1<->Ad1	7	4
Ne1<->Ad1	6	4

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:10324 protein:vir:95258 protein:vir:6378	VHML Felix 01 BcepNazgul	99 % 29 % 14 %
Portal	protein:vir:10321 protein:vir:79538 protein:vir:96738	VHML cdtI VP882	97 % 23 % 21 %
TermL	protein:vir:10320 protein:vir:387 protein:vir:3418	VHML N15 lambda	100 % 30 % 29 %
MTP	protein:vir:10337 protein:vir:1846 protein:vir:79133	VHML 186 RSA1	96 % 39 % 38 %
Sheath	protein:vir:10336 protein:vir:79141 protein:vir:1172	VHML RSA1 phi CTX	97 % 42 % 41 %
Ad1	protein:vir:3419 protein:vir:388	lambda N15	27 % 22 %
Ne1	protein:vir:10326 protein:vir:96763 protein:vir:3427	VHML VP882 lambda	98 % 34 % 23 %
Tc1	protein:vir:10327 protein:vir:96764 protein:vir:1994	VHML VP882 Mu	100 % 22 % 14 %