BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_019722.1_cdsid_YP_007112499.1 [gene=F861_gp19] [protein=tail tube protein] [protein_id=YP_007112499.1] [location=15251..15727] (158 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|19556|lcl|protein:vir:10337 Length: 167 # NCBI annotation: OR... 300 5e-84 gi|15695|lcl|protein:vir:1173 Length: 171 # NCBI annotation: hyp... 108 2e-26 gi|11899|lcl|protein:vir:79133 Length: 169 # NCBI annotation: pu... 105 3e-25 gi|4414|lcl|protein:vir:98546 Length: 172 # NCBI annotation: gp2... 103 1e-24 gi|13755|lcl|protein:vir:1846 Length: 173 # NCBI annotation: tai... 103 1e-24 gi|17000|lcl|protein:vir:6080 Length: 172 # NCBI annotation: gpF... 102 3e-24 gi|17354|lcl|protein:vir:2036 Length: 172 # NCBI annotation: gpF... 102 3e-24 gi|18705|lcl|protein:vir:5712 Length: 172 # NCBI annotation: FII... 99 3e-23 gi|9915|lcl|protein:vir:103992 Length: 169 # NCBI annotation: ph... 93 2e-21 gi|11951|lcl|protein:vir:79203 Length: 169 # NCBI annotation: gp... 93 2e-21 gi|10962|lcl|protein:vir:78189 Length: 169 # NCBI annotation: gp... 93 2e-21 gi|2195|lcl|protein:vir:100324 Length: 168 # NCBI annotation: ta... 91 6e-21 gi|5618|lcl|protein:vir:107863 Length: 174 # NCBI annotation: gp... 57 1e-10 gi|11830|lcl|protein:vir:79072 Length: 174 # NCBI annotation: gp... 55 3e-10 gi|8330|lcl|protein:vir:96741 Length: 168 # NCBI annotation: put... 42 5e-06 gi|18781|lcl|protein:vir:7429 Length: 581 # NCBI annotation: gp6... 26 0.22 gi|14004|lcl|protein:vir:8183 Length: 506 # NCBI annotation: gp3... 22 4.5 gi|8220|lcl|protein:vir:101493 Length: 588 # NCBI annotation: gp... 22 5.5 gi|9070|lcl|protein:vir:102238 Length: 588 # NCBI annotation: gp... 22 5.5 gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hyp... 21 8.0 >gi|19556|lcl|protein:vir:10337 Length: 167 # NCBI annotation: ORF40 # Family: family:all:129 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758932;genbank:gi:27311208;genbank:GeneID :956127 Length = 167 Score = 300 bits (769), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 152/159 (95%), Positives = 154/159 (96%), Gaps = 1/159 (0%) Query: 1 MNLFADGKGYAGVVEEVTPPKLTLKTEEFKAGGMDAPLELDQGMEKLECNFTVASYEKEL 60 MNLFADGKGYAGVVEEVTPPKLTLKTEEFKAGGMDAPLELDQGMEKLECNFTVASYEKEL Sbjct: 9 MNLFADGKGYAGVVEEVTPPKLTLKTEEFKAGGMDAPLELDQGMEKLECNFTVASYEKEL 68 Query: 61 FAAYGLVPGKMINVTLRGAFEQDGETREVVMVLNGSWKELDFGTWKSGEKAQLKVAVGLK 120 FAAYGLVPGKMINVTLRGAFEQDGETREVVMVLNGSWKELDFGTWKSGEKAQLKVAVGL+ Sbjct: 69 FAAYGLVPGKMINVTLRGAFEQDGETREVVMVLNGSWKELDFGTWKSGEKAQLKVAVGLQ 128 Query: 121 KFELK-IDGEEKVFIDIPNMVRRINGTDLLEAARKAIGL 158 + E K GEEKVFIDIPNMVRRINGTDLLEAARKAIGL Sbjct: 129 EVETKNPTGEEKVFIDIPNMVRRINGTDLLEAARKAIGL 167 >gi|15695|lcl|protein:vir:1173 Length: 171 # NCBI annotation: hypothetical protein # Family: family:all:129 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490622;genbank:gi:17313242;genbank:GeneID :927298 Length = 171 Score = 108 bits (271), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 60/162 (37%), Positives = 91/162 (56%), Gaps = 4/162 (2%) Query: 1 MNLFADGKGYAGVVEEVTPPKLTLKTEEFKAGGMDAPLELDQGMEK--LECNFTVASYEK 58 MNLF DG Y GVV+ T P L K E F+ GGM+ P++ D G + ++ +T+ + Sbjct: 10 MNLFNDGGSYQGVVKSCTLPPLARKMEAFRGGGMNGPVKADLGFDDDGIQFEWTLGGLDL 69 Query: 59 ELFAAYGLVPGKMINVTLRGAFEQD--GETREVVMVLNGSWKELDFGTWKSGEKAQLKVA 116 YG V + + G+F+QD GE V +V+ G + ++ G + GE + K+ Sbjct: 70 TALKQYGAVSANGVMLRFAGSFQQDDTGEVTSVEIVVRGRHETIEMGDAQPGEDTEHKIT 129 Query: 117 VGLKKFELKIDGEEKVFIDIPNMVRRINGTDLLEAARKAIGL 158 ++L ++GEE + ID+ N V ++NG DLLEA RKAIGL Sbjct: 130 TTCSYYKLVVNGEEVIEIDLLNFVEKVNGKDLLEAQRKAIGL 171 >gi|11899|lcl|protein:vir:79133 Length: 169 # NCBI annotation: putative tail tube protein gpFII # Family: family:all:129 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165277;genbank:gi:145708102;genbank:Ge neID:5247144 Length = 169 Score = 105 bits (262), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 63/160 (39%), Positives = 86/160 (53%), Gaps = 2/160 (1%) Query: 1 MNLFADGKGYAGVVEEVTPPKLTLKTEEFKAGGMDAPLELDQGMEKLECNFTVASYEKEL 60 N+FADG + G EE+ PKL K EE++AGGM+ +++D G EKLE T +E+ Sbjct: 10 FNVFADGVVHTGECEEINLPKLARKLEEYRAGGMNGAIQIDMGNEKLELETTYGGPMREI 69 Query: 61 FAAYGL--VPGKMINVTLRGAFEQDGETREVVMVLNGSWKELDFGTWKSGEKAQLKVAVG 118 YG V G MI E E V +V+ G E+DFGT K+G KA KV Sbjct: 70 LKQYGTTAVDGAMIRFAGAYQHEDTKEVDAVEIVVRGRHTEIDFGTAKAGAKAPFKVKSS 129 Query: 119 LKKFELKIDGEEKVFIDIPNMVRRINGTDLLEAARKAIGL 158 L +++ ++GE +D N V + G D L A R+AIGL Sbjct: 130 LTYYKMTVNGEVWCELDFVNFVEVVFGEDRLAAQRRAIGL 169 >gi|4414|lcl|protein:vir:98546 Length: 172 # NCBI annotation: gp22 # Family: family:all:129 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958077;genbank:gi:41057374;genbank:GeneID :2744217 Length = 172 Score = 103 bits (257), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 61/163 (37%), Positives = 90/163 (55%), Gaps = 5/163 (3%) Query: 1 MNLFADGKGYAGVVEEVTPPKLTLKTEEFKAGGMDAPLELDQGMEK--LECNFTVASY-E 57 +N+F DG Y GVVE VT PKLT K E ++ GGM+ +D G++ L ++V + Sbjct: 10 LNMFNDGLSYMGVVESVTLPKLTRKLENYRGGGMNGAAAIDLGLDDDALTVEWSVGGLPD 69 Query: 58 KELFAAYGLVPGKMINVTLRGAFEQD--GETREVVMVLNGSWKELDFGTWKSGEKAQLKV 115 L+A Y + + G++++D GE V +V+ G KE+D G K GE K+ Sbjct: 70 VALWAQYAAPGADAVPLRFAGSYQRDDTGEIVAVEVVMRGRHKEIDGGENKQGENTSTKL 129 Query: 116 AVGLKKFELKIDGEEKVFIDIPNMVRRINGTDLLEAARKAIGL 158 + + L IDG + + ID NMV ++NG D LE R+AIGL Sbjct: 130 STVCTYYRLTIDGSDVIEIDTVNMVEKVNGVDRLEQHRRAIGL 172 >gi|13755|lcl|protein:vir:1846 Length: 173 # NCBI annotation: tail tube protein FII # Family: family:all:129 # MgeID: mge:324 # MgeName: 186 # Cross-refs: genbank:acc:NP_052270;genbank:gi:9634077;genbank:GeneID: 1262451 Length = 173 Score = 103 bits (257), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 61/163 (37%), Positives = 90/163 (55%), Gaps = 5/163 (3%) Query: 1 MNLFADGKGYAGVVEEVTPPKLTLKTEEFKAGGMDAPLELDQGMEK--LECNFTVASY-E 57 +N+F DG Y GVVE VT PKLT K E ++ GGM+ +D G++ L ++V + Sbjct: 10 LNMFNDGLSYMGVVESVTLPKLTRKLENYRGGGMNGAAAIDLGLDDDALTVEWSVGGLPD 69 Query: 58 KELFAAYGLVPGKMINVTLRGAFEQD--GETREVVMVLNGSWKELDFGTWKSGEKAQLKV 115 L+A Y + + G++++D GE V +V+ G KE+D G K GE K+ Sbjct: 70 VALWAQYAAPGADAVPLRFAGSYQRDDTGEIVAVEVVMRGRHKEIDGGENKQGENTSTKL 129 Query: 116 AVGLKKFELKIDGEEKVFIDIPNMVRRINGTDLLEAARKAIGL 158 + + L IDG + + ID NMV ++NG D LE R+AIGL Sbjct: 130 STVCTYYRLTIDGSDIIEIDTVNMVEKVNGVDRLEQHRRAIGL 172 >gi|17000|lcl|protein:vir:6080 Length: 172 # NCBI annotation: gpFII # Family: family:all:129 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878221;genbank:gi:33438920;genbank:GeneID :1457755 Length = 172 Score = 102 bits (253), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 95/166 (57%), Gaps = 11/166 (6%) Query: 1 MNLFADGKGYAGVVEEVTPPKLTLKTEEFKAGGMD--APLELDQGMEKLECNFTVASYEK 58 MN+F +G Y GV + VT PKLT K E ++ GM+ AP++L + L +++ + Sbjct: 10 MNVFLNGYSYQGVAKSVTLPKLTRKLENYRGAGMNGSAPVDLGLDDDALSMEWSLGGFPD 69 Query: 59 ----ELFAAYGLVPGKMINVTLRGAFEQD--GETREVVMVLNGSWKELDFGTWKSGEKAQ 112 EL+AA G+ + + G++++D GET V +V+ G KE+D G K GE + Sbjct: 70 SVIWELYAATGV---DAVPIRFAGSYQRDDTGETVAVEVVMRGRQKEIDTGEGKQGEDTE 126 Query: 113 LKVAVGLKKFELKIDGEEKVFIDIPNMVRRINGTDLLEAARKAIGL 158 K++V F L +DG+E V ID NM+ ++NG D LE R+ IGL Sbjct: 127 SKISVVCTYFRLTMDGKELVEIDTINMIEKVNGVDRLEQHRRNIGL 172 >gi|17354|lcl|protein:vir:2036 Length: 172 # NCBI annotation: gpFII # Family: family:all:129 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046779;genbank:gi:9630350;genbank:GeneID: 1261535 Length = 172 Score = 102 bits (253), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 95/166 (57%), Gaps = 11/166 (6%) Query: 1 MNLFADGKGYAGVVEEVTPPKLTLKTEEFKAGGMD--APLELDQGMEKLECNFTVASYEK 58 MN+F +G Y GV + VT PKLT K E ++ GM+ AP++L + L +++ + Sbjct: 10 MNVFLNGYSYQGVAKSVTLPKLTRKLENYRGAGMNGSAPVDLGLDDDALSMEWSLGGFPD 69 Query: 59 ----ELFAAYGLVPGKMINVTLRGAFEQD--GETREVVMVLNGSWKELDFGTWKSGEKAQ 112 EL+AA G+ + + G++++D GET V +V+ G KE+D G K GE + Sbjct: 70 SVIWELYAATGV---DAVPIRFAGSYQRDDTGETVAVEVVMRGRQKEIDTGEGKQGEDTE 126 Query: 113 LKVAVGLKKFELKIDGEEKVFIDIPNMVRRINGTDLLEAARKAIGL 158 K++V F L +DG+E V ID NM+ ++NG D LE R+ IGL Sbjct: 127 SKISVVCTYFRLTMDGKELVEIDTINMIEKVNGVDRLEQHRRNIGL 172 >gi|18705|lcl|protein:vir:5712 Length: 172 # NCBI annotation: FII # Family: family:all:129 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839871;genbank:gi:30065726;genbank:GeneID :1260619 Length = 172 Score = 99.0 bits (245), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 5/163 (3%) Query: 1 MNLFADGKGYAGVVEEVTPPKLTLKTEEFKAGGMD--APLELDQGMEKLECNFTVASY-E 57 MN+F +G Y GV + VT PKLT K E ++ GM+ AP++L + L +++ + + Sbjct: 10 MNVFLNGYSYQGVAKSVTLPKLTRKLENYRGAGMNGSAPVDLGLDDDALSMEWSLGGFPD 69 Query: 58 KELFAAYGLVPGKMINVTLRGAFEQD--GETREVVMVLNGSWKELDFGTWKSGEKAQLKV 115 ++ Y + + G++++D GET V +V+ G KE+D G K GE + K+ Sbjct: 70 SVIWELYAATSADAVPIRFAGSYQRDDTGETVAVEVVMRGRQKEVDTGEGKQGEDTESKL 129 Query: 116 AVGLKKFELKIDGEEKVFIDIPNMVRRINGTDLLEAARKAIGL 158 V F+L +DG+E V ID NM+ ++NG D LE R+ IGL Sbjct: 130 PVICTYFKLTMDGKELVEIDTINMIEKVNGVDRLEQHRRNIGL 172 >gi|9915|lcl|protein:vir:103992 Length: 169 # NCBI annotation: phage major tail tube protein # Family: family:all:129 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293728;genbank:gi:72537698;genbank:GeneID :3608122 Length = 169 Score = 93.2 bits (230), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 87/159 (54%), Gaps = 2/159 (1%) Query: 2 NLFADGKGYAGVVEEVTPPKLTLKTEEFKAGGMDAPLELDQGMEKLECNFTVASYEKELF 61 N+F +G + G VEE+ PKL K E ++ GM P+++D G E+L+ +T + E+ Sbjct: 11 NVFHNGANFVGEVEELNLPKLKRKMEAWQGSGMTGPVKIDYGSEELQLEWTCGGFMVEVL 70 Query: 62 AAYGLVPGKMINVTLRGAFEQDGETR--EVVMVLNGSWKELDFGTWKSGEKAQLKVAVGL 119 YG V + + G + ++ + ++ +V+ G +E+D GT K+ E + K+ Sbjct: 71 EQYGAVQHDGVLLRFAGGYRREDSKKHDQIEVVVKGRHEEIDMGTAKAKEDTKFKITTNA 130 Query: 120 KKFELKIDGEEKVFIDIPNMVRRINGTDLLEAARKAIGL 158 ++L ++G + + +D N V +ING DL R+A+GL Sbjct: 131 SYYKLTVNGRDLIELDFVNAVEKINGMDLASDLRRAMGL 169 >gi|11951|lcl|protein:vir:79203 Length: 169 # NCBI annotation: gp29, phage major tail tube protein # Family: family:all:129 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111060;genbank:gi:134288759;genbank:Ge neID:4960722 Length = 169 Score = 93.2 bits (230), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 87/159 (54%), Gaps = 2/159 (1%) Query: 2 NLFADGKGYAGVVEEVTPPKLTLKTEEFKAGGMDAPLELDQGMEKLECNFTVASYEKELF 61 N+F +G + G VEE+ PKL K E ++ GM P+++D G E+L+ +T + E+ Sbjct: 11 NVFHNGANFVGEVEELNLPKLKRKMEAWQGSGMTGPVKIDYGSEELQLEWTCGGFMVEVL 70 Query: 62 AAYGLVPGKMINVTLRGAFEQDGETR--EVVMVLNGSWKELDFGTWKSGEKAQLKVAVGL 119 YG V + + G + ++ + ++ +V+ G +E+D GT K+ E + K+ Sbjct: 71 EQYGAVQHDGVLLRFAGGYRREDSKKHDQIEVVVKGRHEEIDMGTAKAKEDTKFKITTNA 130 Query: 120 KKFELKIDGEEKVFIDIPNMVRRINGTDLLEAARKAIGL 158 ++L ++G + + +D N V +ING DL R+A+GL Sbjct: 131 SYYKLTVNGRDLIELDFVNAVEKINGMDLASDLRRAMGL 169 >gi|10962|lcl|protein:vir:78189 Length: 169 # NCBI annotation: gp32, phage major tail tube protein # Family: family:all:129 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111182;genbank:gi:134288724;genbank:Ge neID:4960649 Length = 169 Score = 93.2 bits (230), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 87/159 (54%), Gaps = 2/159 (1%) Query: 2 NLFADGKGYAGVVEEVTPPKLTLKTEEFKAGGMDAPLELDQGMEKLECNFTVASYEKELF 61 N+F +G + G VEE+ PKL K E ++ GM P+++D G E+L+ +T + E+ Sbjct: 11 NVFHNGANFVGEVEELNLPKLKRKMEAWQGSGMTGPVKIDYGSEELQLEWTCGGFMVEVL 70 Query: 62 AAYGLVPGKMINVTLRGAFEQDGETR--EVVMVLNGSWKELDFGTWKSGEKAQLKVAVGL 119 YG V + + G + ++ + ++ +V+ G +E+D GT K+ E + K+ Sbjct: 71 EQYGAVQHDGVLLRFAGGYRREDSKKHDQIEVVVKGRHEEIDMGTAKAKEDTKFKITTNA 130 Query: 120 KKFELKIDGEEKVFIDIPNMVRRINGTDLLEAARKAIGL 158 ++L ++G + + +D N V +ING DL R+A+GL Sbjct: 131 SYYKLTVNGRDLIELDFVNAVEKINGMDLASDLRRAMGL 169 >gi|2195|lcl|protein:vir:100324 Length: 168 # NCBI annotation: tail tube protein FII # Family: family:all:129 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655493;genbank:gi:109289961;genbank:GeneI D:4157367 Length = 168 Score = 91.3 bits (225), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 87/161 (54%), Gaps = 7/161 (4%) Query: 2 NLFADGKGYAGVVEEVTPPKLTLKTEEFKAGGMDAPLELDQGMEKLECNFTVASYEKELF 61 N DG Y G EVT PKL ++ E+++AGGM AP+ ++ G+EKLE F + +E++L Sbjct: 11 NFSVDGTSYLGETTEVTQPKLAMQLEDYRAGGMIAPVGVNMGLEKLELEFKIGGHEEDLL 70 Query: 62 AAYGLVPGKMINVTLR--GAFEQDGETR--EVVMVLNGSWKELDFGTWKSGEKAQLKVAV 117 +G G + R GA++ D + V +V G E+D G+ K+G+ + Sbjct: 71 KLFG---GSISGNAFRFNGAYQHDDDDSVDAVELVCRGRIAEIDEGSSKAGDDTEHSYKA 127 Query: 118 GLKKFELKIDGEEKVFIDIPNMVRRINGTDLLEAARKAIGL 158 L ++ ++G + + ID N + ++G D L RKA+GL Sbjct: 128 SLTYYKKTVNGVDIIEIDTLNQIYIVDGKDRLAEIRKAMGL 168 >gi|5618|lcl|protein:vir:107863 Length: 174 # NCBI annotation: gp40 # Family: family:all:129 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024713;genbank:gi:48696950;genbank:GeneID :2845951 Length = 174 Score = 56.6 bits (135), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 72/163 (44%), Gaps = 10/163 (6%) Query: 2 NLFADGKGYAGVVEEVTPPKLTLKTEEFKAGGMDAPLELDQGMEKLE----CNFTVASYE 57 N++ G EE+ P + E KA GM +EL G++KLE N A Sbjct: 14 NVYLSNNSMLGKAEEIKLPDIQAIMAEHKALGMIGKVELPGGLDKLEGEIKWNSLYADVA 73 Query: 58 KELFAAYGLVPGKM-INVTLRGAFEQDGETREVVMV--LNGSWKELDFGTWKSGEKAQLK 114 K + + VP + N+ GA G REV +V L +K+ GT+K E A Sbjct: 74 KAMANPFKAVPLQCRSNIETYGA---QGRVREVSLVTYLTVMFKKNPLGTYKQHENADFS 130 Query: 115 VAVGLKKFELKIDGEEKVFIDIPNMVRRINGTDLLEAARKAIG 157 A G + IDGEE + +D + R+ G D+L R IG Sbjct: 131 SAFGATYIKQVIDGEEVLELDYLANIFRVGGEDMLADFRANIG 173 >gi|11830|lcl|protein:vir:79072 Length: 174 # NCBI annotation: gp14, phage major tail tube protein # Family: family:all:129 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111214;genbank:gi:134288801;genbank:Ge neID:4960746 Length = 174 Score = 55.5 bits (132), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 72/163 (44%), Gaps = 10/163 (6%) Query: 2 NLFADGKGYAGVVEEVTPPKLTLKTEEFKAGGMDAPLELDQGMEKLE----CNFTVASYE 57 N++ G EE+ P + E KA GM +EL G++KLE N A Sbjct: 14 NVYLSNNSMLGKAEEIKLPDIQAIMAEHKALGMIGKVELPGGLDKLEGEIKWNSLYADVA 73 Query: 58 KELFAAYGLVPGKM-INVTLRGAFEQDGETREVVMV--LNGSWKELDFGTWKSGEKAQLK 114 K + + VP + N+ GA G REV +V L +K+ GT+K E A Sbjct: 74 KAMANPFKAVPLQCRSNIETYGA---QGRVREVSLVTYLTVMFKKNPLGTYKQHENADFS 130 Query: 115 VAVGLKKFELKIDGEEKVFIDIPNMVRRINGTDLLEAARKAIG 157 + G + IDGEE + +D + R+ G D+L R IG Sbjct: 131 SSFGATYIKQVIDGEEVLELDYLANIFRVGGEDMLADFRANIG 173 >gi|8330|lcl|protein:vir:96741 Length: 168 # NCBI annotation: putative tail tube protein # Family: family:all:129 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039840;genbank:gi:126010870;genbank:Ge neID:5076251 Length = 168 Score = 41.6 bits (96), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 4/147 (2%) Query: 14 VEEVTPPKLTLKTEEFKAGGMDAPLELDQGMEKLECNFTVASYEKELFAAYGLVPGKMIN 73 ++E TPP++ EE + G A E+ G+EKL V +L +AYGL G++ Sbjct: 23 IDEFTPPEVKKVMEEARGGKFIAD-EIMVGLEKLTYELKVLGPTADLLSAYGLKQGEICQ 81 Query: 74 VTLRGAFEQDGETREVVM--VLNGSWKELDFGTWKSGEKAQLKVAVGLKKFELKIDGEEK 131 V ++ A EQD E + + L+G + K G K + ++ L ++ +G Sbjct: 82 VDVK-ASEQDKEGNKYALHYSLSGEVVGVKEEGVKMGSKPGVTISGSLTAYKKTENGTTV 140 Query: 132 VFIDIPNMVRRINGTDLLEAARKAIGL 158 I+ V + D++ R+ +GL Sbjct: 141 YDINTATQVINLGQGDIMAEHRRNVGL 167 >gi|18781|lcl|protein:vir:7429 Length: 581 # NCBI annotation: gp6 # Family: family:all:147 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818544;genbank:gi:29566981;genbank:GeneID :1260231 Length = 581 Score = 26.2 bits (56), Expect = 0.22, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 8/69 (11%) Query: 38 LELDQGMEKLECNFTVASYEKELFAAYGLVPGKMINVTLRGAFEQDGETREVVMVLNGSW 97 L++D G+ +L + T+ + +E+ A + GK+ +++D RE+V + W Sbjct: 286 LQIDSGVLQLANDQTIPEFNQEIAAEFTDFVGKVFK-----EYDEDTHVRELVYNPSQDW 340 Query: 98 KEL---DFG 103 + + D+G Sbjct: 341 ETIAAVDYG 349 >gi|14004|lcl|protein:vir:8183 Length: 506 # NCBI annotation: gp3 # Family: family:all:523 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817976;genbank:gi:29566410;genbank:GeneID :2700964 Length = 506 Score = 21.9 bits (45), Expect = 4.5, Method: Composition-based stats. Identities = 6/16 (37%), Positives = 12/16 (75%) Query: 105 WKSGEKAQLKVAVGLK 120 W+ GE A +++A+G + Sbjct: 352 WREGESAHVEIALGTQ 367 >gi|8220|lcl|protein:vir:101493 Length: 588 # NCBI annotation: gp8 # Family: family:all:147 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655387;genbank:gi:109522575;genbank:GeneI D:4157565 Length = 588 Score = 21.6 bits (44), Expect = 5.5, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 21/37 (56%) Query: 35 DAPLELDQGMEKLECNFTVASYEKELFAAYGLVPGKM 71 D L +DQ + +L + ++ S+ +E+ A + GK+ Sbjct: 285 DHKLRVDQEVIELAADMSIESFNQEIGADFTEYVGKV 321 >gi|9070|lcl|protein:vir:102238 Length: 588 # NCBI annotation: gp8 # Family: family:all:147 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655204;genbank:gi:109522784;genbank:GeneI D:4157477 Length = 588 Score = 21.6 bits (44), Expect = 5.5, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 21/37 (56%) Query: 35 DAPLELDQGMEKLECNFTVASYEKELFAAYGLVPGKM 71 D L +DQ + +L + ++ S+ +E+ A + GK+ Sbjct: 285 DHKLRVDQEVIELAADMSIESFNQEIGADFTEYVGKV 321 >gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690755;genbank:gi:22854995;genbank:GeneID :955207 Length = 416 Score = 20.8 bits (42), Expect = 8.0, Method: Compositional matrix adjust. Identities = 7/14 (50%), Positives = 11/14 (78%) Query: 97 WKELDFGTWKSGEK 110 W+E+ F T+ SGE+ Sbjct: 399 WREMGFITYTSGEE 412 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.316 0.137 0.391 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,429 Number of Sequences: 514 Number of extensions: 3302 Number of successful extensions: 39 Number of sequences better than 100.0: 22 Number of HSP's better than 100.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 22 length of query: 158 length of database: 206,069 effective HSP length: 65 effective length of query: 93 effective length of database: 172,659 effective search space: 16057287 effective search space used: 16057287 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 33 (17.3 bits)