Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Felix 01 | Genbank acc : NC_005282 | Aclame index mge :1561

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 124

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	56	lcl\|Aclame:protein:vir:95258\|NCBI_annot:Phage	HHsearch (proba=100.00%)
Portal	51	lcl\|Aclame:protein:vir:95254\|NCBI_annot:Phage	HHsearch (proba=100.00%)
TermL	50	lcl\|Aclame:protein:vir:95253\|NCBI_annot:Terminase,	Blast (e-value=0)
MTP	36	lcl\|Aclame:protein:vir:95181\|NCBI_annot:Putative	Blast (e-value=1e-10)
Sheath	61	lcl\|Aclame:protein:vir:95263\|NCBI_annot:Phage	HHsearch (proba=100.00%)
Ad1	57	lcl\|Aclame:protein:vir:95259\|NCBI_annot:Phage	HHsearch (proba=100.00%)
Hc1	59	lcl\|Aclame:protein:vir:95261\|NCBI_annot:Phage	HHsearch (proba=100.00%)
Ne1	58	lcl\|Aclame:protein:vir:95260\|NCBI_annot:Phage	HHsearch (proba=100.00%)
Tc1	60	lcl\|Aclame:protein:vir:95262\|NCBI_annot:Phage	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:95258 protein:vir:10324 protein:vir:4902	Felix 01 VHML Sfi11	100 % 29 % 15 %
Portal	protein:vir:95254 protein:vir:78161 protein:vir:108215	Felix 01 Min1 Giles	100 % 21 % 19 %
TermL	protein:vir:95253 protein:vir:97250 protein:vir:103223	Felix 01 M6 JK06	100 % 21 % 21 %
MTP	protein:vir:105771 protein:vir:196 protein:vir:93600	ES18 HK97 phi 4795	22 % 20 % 16 %
Sheath	protein:vir:95263 protein:vir:80052 protein:vir:5260	Felix 01 B054 Aaphi23	100 % 23 % 19 %
Ad1	protein:vir:95259	Felix 01	100 %
Hc1	protein:vir:95261 protein:vir:5258 protein:vir:97237	Felix 01 Aaphi23 M6	100 % 22 % 15 %
Ne1	protein:vir:95260 protein:vir:107757 protein:vir:5257	Felix 01 BcepB1A Aaphi23	84 % 22 % 22 %
Tc1	protein:vir:95262	Felix 01	100 %