Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phi CTX | Genbank acc : NC_003278 | Aclame index mge :24

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 9) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 47

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	5	lcl\|Aclame:protein:vir:1153\|NCBI_annot:predicted	HHsearch (proba=100.00%)
Portal	2	lcl\|Aclame:protein:vir:1150\|NCBI_annot:predicted	HHsearch (proba=100.00%)
TermL	3	lcl\|Aclame:protein:vir:1151\|NCBI_annot:predicted	Blast (e-value=0)
MTP	25	lcl\|Aclame:protein:vir:1173\|NCBI_annot:hypothetical	Blast (e-value=1e-100)
Sheath	24	lcl\|Aclame:protein:vir:1172\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad1	7	lcl\|Aclame:protein:vir:1155\|NCBI_annot:predicted	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	16	lcl\|Aclame:protein:vir:1164\|NCBI_annot:predicted	HHsearch (proba=100.00%)
Tc1	15	lcl\|Aclame:protein:vir:1163\|NCBI_annot:predicted	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Tc1<->Ad1	8	4
Ne1<->Ad1	9	4

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:1153 protein:vir:79171 protein:vir:79157	phi CTX phiE202 RSA1	100 % 64 % 59 %
Portal	protein:vir:1150 protein:vir:79150 protein:vir:79207	phi CTX RSA1 phiE202	100 % 57 % 56 %
TermL	protein:vir:1151 protein:vir:79177 protein:vir:79128	phi CTX phiE202 RSA1	100 % 64 % 62 %
MTP	protein:vir:1173 protein:vir:98546 protein:vir:1846	phi CTX PSP3 186	100 % 58 % 57 %
Sheath	protein:vir:1172 protein:vir:1845 protein:vir:79141	phi CTX 186 RSA1	100 % 69 % 68 %
Ad1	protein:vir:1155 protein:vir:79188 protein:vir:79124	phi CTX phiE202 RSA1	100 % 46 % 46 %
Ne1	protein:vir:1164 protein:vir:79179 protein:vir:79115	phi CTX phiE202 RSA1	100 % 47 % 44 %
Tc1	protein:vir:1163 protein:vir:79131 protein:vir:2025	phi CTX RSA1 P2	100 % 46 % 45 %