Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : RSA1 | Genbank acc : NC_009382 | Aclame index mge :1863

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 9) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 51

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	8	lcl\|Aclame:protein:vir:79157\|NCBI_annot:P2	HHsearch (proba=100.00%)
Portal	5	lcl\|Aclame:protein:vir:79150\|NCBI_annot:bacteriophage	HHsearch (proba=100.00%)
TermL	6	lcl\|Aclame:protein:vir:79128\|NCBI_annot:terminase\|genbank:acc:YP_001165255;genbank:gi:145708080;genb	Blast (e-value=0)
MTP	28	lcl\|Aclame:protein:vir:79133\|NCBI_annot:putative	Blast (e-value=1e-98)
Sheath	27	lcl\|Aclame:protein:vir:79141\|NCBI_annot:major	HHsearch (proba=100.00%)
Ad1	10	lcl\|Aclame:protein:vir:79124\|NCBI_annot:head	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	17	lcl\|Aclame:protein:vir:79115\|NCBI_annot:tail	HHsearch (proba=100.00%)
Tc1	16	lcl\|Aclame:protein:vir:79131\|NCBI_annot:tail	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Tc1<->Ad1	6	4
Ne1<->Ad1	7	4

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79157 protein:vir:79171 protein:vir:1153	RSA1 phiE202 phi CTX	100 % 63 % 60 %
Portal	protein:vir:79150 protein:vir:79207 protein:vir:5691	RSA1 phiE202 L-413C	100 % 62 % 59 %
TermL	protein:vir:79128 protein:vir:79177 protein:vir:1151	RSA1 phiE202 phi CTX	100 % 64 % 62 %
MTP	protein:vir:79133 protein:vir:79203 protein:vir:100324	RSA1 phiE202 phi-MhaA1-PHL101	100 % 53 % 51 %
Sheath	protein:vir:79141 protein:vir:1172 protein:vir:79181	RSA1 phi CTX phiE202	100 % 68 % 65 %
Ad1	protein:vir:79124 protein:vir:79188 protein:vir:1155	RSA1 phiE202 phi CTX	100 % 55 % 46 %
Ne1	protein:vir:79115 protein:vir:98557 protein:vir:1838	RSA1 PSP3 186	100 % 45 % 45 %
Tc1	protein:vir:79131 protein:vir:2025 protein:vir:5702	RSA1 P2 L-413C	100 % 46 % 46 %