Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiES15 | Genbank acc : NC_018454

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 5) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 52

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	33	lcl\|NC_018454.1_cdsid_YP_006590038.1	HHsearch (proba=100.00%)
Portal	30	lcl\|NC_018454.1_cdsid_YP_006590035.1	HHsearch (proba=100.00%)
TermL	29	lcl\|NC_018454.1_cdsid_YP_006590034.1	Blast (e-value=4e-94)
MTP	34	lcl\|NC_018454.1_cdsid_YP_006590039.1	Blast (e-value=1e-06)
Sheath	NOT FOUND
Ad1	35	lcl\|NC_018454.1_cdsid_YP_006590040.1	HHsearch (proba=100.00%)
Hc1	36	lcl\|NC_018454.1_cdsid_YP_006590041.1	HHsearch (proba=100.00%)
Ne1	37	lcl\|NC_018454.1_cdsid_YP_006590042.1	HHsearch (proba=100.00%)
Tc1	38	lcl\|NC_018454.1_cdsid_YP_006590043.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:95131 protein:vir:96792 protein:vir:96123	PA73 phiHSIC 37	33 % 29 % 17 %
Portal	protein:vir:95149 protein:vir:80453 protein:vir:78393	PA73 BcepGomr SETP3	32 % 30 % 25 %
TermL	protein:vir:1325 protein:vir:6239 protein:vir:102941	phi-C31 phi-BT1 EJ-1	16 % 16 % 16 %
MTP	protein:vir:79536 protein:vir:78892 protein:vir:398	cdtI A006 N15	33 % 33 % 31 %
Ad1	protein:vir:78383 protein:vir:95176 protein:vir:95004	SETP3 PA73 KS7	29 % 28 % 28 %
Hc1	protein:vir:79639 protein:vir:104346 protein:vir:97237	TLS RTP M6	34 % 32 % 25 %
Ne1	protein:vir:78380 protein:vir:94994 protein:vir:107703	SETP3 KS7 T1	38 % 37 % 35 %
Tc1	protein:vir:107704 protein:vir:79637 protein:vir:103278	T1 TLS JK06	26 % 24 % 24 %