Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : JK06 | Genbank acc : NC_007291 | Aclame index mge :1605

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 82

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	25	lcl\|Aclame:protein:vir:103285\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Portal	33	lcl\|Aclame:protein:vir:103219\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
TermL	36	lcl\|Aclame:protein:vir:103223\|NCBI_annot:putative	Blast (e-value=8e-98)
MTP	17	lcl\|Aclame:protein:vir:103277\|NCBI_annot:hypothetical	Blast (e-value=1e-127)
Sheath	NOT FOUND
Ad1	23	lcl\|Aclame:protein:vir:103283\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	21	lcl\|Aclame:protein:vir:103282\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	19	lcl\|Aclame:protein:vir:103280\|NCBI_annot:phage-related	HHsearch (proba=100.00%)
Tc1	18	lcl\|Aclame:protein:vir:103278\|NCBI_annot:phage-related	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Tc1<->Ad1	5	4
Ne1<->Ad1	4	3

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:103285 protein:vir:104342 protein:vir:79642	JK06 RTP TLS	100 % 73 % 52 %
Portal	protein:vir:103219 protein:vir:104338 protein:vir:107662	JK06 RTP T1	100 % 75 % 62 %
TermL	protein:vir:103223 protein:vir:104336 protein:vir:79648	JK06 RTP TLS	100 % 77 % 48 %
MTP	protein:vir:103277 protein:vir:104349 protein:vir:79636	JK06 RTP TLS	100 % 63 % 55 %
Ad1	protein:vir:103283 protein:vir:104344 protein:vir:107702	JK06 RTP T1	100 % 46 % 40 %
Hc1	protein:vir:103282 protein:vir:104346 protein:vir:79639	JK06 RTP TLS	100 % 41 % 36 %
Ne1	protein:vir:103280 protein:vir:104347 protein:vir:79638	JK06 RTP TLS	100 % 59 % 41 %
Tc1	protein:vir:103278 protein:vir:104348 protein:vir:79637	JK06 RTP TLS	100 % 66 % 51 %