Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : TLS | Genbank acc : NC_009540 | Aclame index mge :1872

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 87

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	36	lcl\|Aclame:protein:vir:79642\|NCBI_annot:HsbB\|genbank:acc:YP_001285525;genbank:gi:148734508;genbank:G	HHsearch (proba=100.00%)
Portal	31	lcl\|Aclame:protein:vir:79647\|NCBI_annot:PorT\|genbank:acc:YP_001285520;genbank:gi:148734503;genbank:G	HHsearch (proba=100.00%)
TermL	30	lcl\|Aclame:protein:vir:79648\|NCBI_annot:TerL\|genbank:acc:YP_001285519;genbank:gi:148734502;genbank:G	Blast (e-value=0)
MTP	42	lcl\|Aclame:protein:vir:79636\|NCBI_annot:TsbA\|genbank:acc:YP_001285531;genbank:gi:148734514;genbank:G	Blast (e-value=1e-132)
Sheath	NOT FOUND
Ad1	38	lcl\|Aclame:protein:vir:79640\|NCBI_annot:gp38\|genbank:acc:YP_001285527;genbank:gi:148734510;genbank:G	HHsearch (proba=100.00%)
Hc1	39	lcl\|Aclame:protein:vir:79639\|NCBI_annot:gp39\|genbank:acc:YP_001285528;genbank:gi:148734511;genbank:G	HHsearch (proba=100.00%)
Ne1	40	lcl\|Aclame:protein:vir:79638\|NCBI_annot:gp40\|genbank:acc:YP_001285529;genbank:gi:148734512;genbank:G	HHsearch (proba=100.00%)
Tc1	41	lcl\|Aclame:protein:vir:79637\|NCBI_annot:gp41\|genbank:acc:YP_001285530;genbank:gi:148734513;genbank:G	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79642 protein:vir:107687 protein:vir:103285	TLS T1 JK06	100 % 74 % 52 %
Portal	protein:vir:79647 protein:vir:107662 protein:vir:103219	TLS T1 JK06	100 % 61 % 58 %
TermL	protein:vir:79648 protein:vir:107694 protein:vir:104336	TLS T1 RTP	100 % 67 % 56 %
MTP	protein:vir:79636 protein:vir:107670 protein:vir:103277	TLS T1 JK06	100 % 68 % 55 %
Ad1	protein:vir:79640 protein:vir:107702 protein:vir:104344	TLS T1 RTP	100 % 51 % 48 %
Hc1	protein:vir:79639 protein:vir:104346 protein:vir:107669	TLS RTP T1	100 % 54 % 44 %
Ne1	protein:vir:79638 protein:vir:107703 protein:vir:104347	TLS T1 RTP	100 % 59 % 43 %
Tc1	protein:vir:79637 protein:vir:107704 protein:vir:104348	TLS T1 RTP	100 % 60 % 54 %