Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 7 lcl|Aclame:protein:vir:80446|NCBI_annot:BcepGomrgp07|genbank:acc:YP_001210227;genbank:gi:146329919;g HHsearch (proba=100.00%)
Portal 5 lcl|Aclame:protein:vir:80453|NCBI_annot:BcepGomrgp05|genbank:acc:YP_001210225;genbank:gi:146329917;g HHsearch (proba=100.00%)
TermL 4 lcl|Aclame:protein:vir:80432|NCBI_annot:BcepGomrgp04|genbank:acc:YP_001210224;genbank:gi:146329916;g Blast (e-value=0)
MTP 12 lcl|Aclame:protein:vir:80398|NCBI_annot:BcepGomrgp12|genbank:acc:YP_001210232;genbank:gi:146329924;g Blast (e-value=0)
Sheath NOT FOUND
Ad1 9 lcl|Aclame:protein:vir:80389|NCBI_annot:BcepGomrgp09|genbank:acc:YP_001210229;genbank:gi:146329921;g HHsearch (proba=100.00%)
Hc1 10 lcl|Aclame:protein:vir:80382|NCBI_annot:BcepGomrgp10|genbank:acc:YP_001210230;genbank:gi:146329922;g HHsearch (proba=100.00%)
Ne1 15 lcl|Aclame:protein:vir:80425|NCBI_annot:BcepGomrgp15|genbank:acc:YP_001210235;genbank:gi:146329927;g HHsearch (proba=100.00%)
Tc1 11 lcl|Aclame:protein:vir:80429|NCBI_annot:BcepGomrgp11|genbank:acc:YP_001210231;genbank:gi:146329923;g HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ne1<->Hc1 5 2
Ne1<->Ad1 6 3
Ne1<->Tc1 4 2


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:80446
protein:vir:78387
protein:vir:94989
BcepGomr
SETP3
KS7
100 %
39 %
38 %
Portal protein:vir:80453
protein:vir:95149
protein:vir:78393
BcepGomr
PA73
SETP3
100 %
46 %
32 %
TermL protein:vir:80432
protein:vir:95130
protein:vir:97250
BcepGomr
PA73
M6
100 %
55 %
44 %
MTP protein:vir:80398
protein:vir:97240
protein:vir:95133
BcepGomr
M6
PA73
100 %
51 %
48 %
Ad1 protein:vir:80389
protein:vir:95176
protein:vir:78383
BcepGomr
PA73
SETP3
100 %
35 %
30 %
Hc1 protein:vir:80382
protein:vir:95145
protein:vir:97237
BcepGomr
PA73
M6
100 %
25 %
23 %
Ne1 protein:vir:80425
protein:vir:97190
protein:vir:95157
BcepGomr
M6
PA73
100 %
36 %
31 %
Tc1 protein:vir:80429
protein:vir:97211
protein:vir:95155
BcepGomr
M6
PA73
100 %
47 %
31 %