Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : BcepGomr | Genbank acc : NC_009447 | Aclame index mge :1882

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 5) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 75

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|Aclame:protein:vir:80446\|NCBI_annot:BcepGomrgp07\|genbank:acc:YP_001210227;genbank:gi:146329919;g	HHsearch (proba=100.00%)
Portal	5	lcl\|Aclame:protein:vir:80453\|NCBI_annot:BcepGomrgp05\|genbank:acc:YP_001210225;genbank:gi:146329917;g	HHsearch (proba=100.00%)
TermL	4	lcl\|Aclame:protein:vir:80432\|NCBI_annot:BcepGomrgp04\|genbank:acc:YP_001210224;genbank:gi:146329916;g	Blast (e-value=0)
MTP	12	lcl\|Aclame:protein:vir:80398\|NCBI_annot:BcepGomrgp12\|genbank:acc:YP_001210232;genbank:gi:146329924;g	Blast (e-value=0)
Sheath	NOT FOUND
Ad1	9	lcl\|Aclame:protein:vir:80389\|NCBI_annot:BcepGomrgp09\|genbank:acc:YP_001210229;genbank:gi:146329921;g	HHsearch (proba=100.00%)
Hc1	10	lcl\|Aclame:protein:vir:80382\|NCBI_annot:BcepGomrgp10\|genbank:acc:YP_001210230;genbank:gi:146329922;g	HHsearch (proba=100.00%)
Ne1	15	lcl\|Aclame:protein:vir:80425\|NCBI_annot:BcepGomrgp15\|genbank:acc:YP_001210235;genbank:gi:146329927;g	HHsearch (proba=100.00%)
Tc1	11	lcl\|Aclame:protein:vir:80429\|NCBI_annot:BcepGomrgp11\|genbank:acc:YP_001210231;genbank:gi:146329923;g	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Hc1	5	2
Ne1<->Ad1	6	3
Ne1<->Tc1	4	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:80446 protein:vir:78387 protein:vir:94989	BcepGomr SETP3 KS7	100 % 39 % 38 %
Portal	protein:vir:80453 protein:vir:95149 protein:vir:78393	BcepGomr PA73 SETP3	100 % 46 % 32 %
TermL	protein:vir:80432 protein:vir:95130 protein:vir:97250	BcepGomr PA73 M6	100 % 55 % 44 %
MTP	protein:vir:80398 protein:vir:97240 protein:vir:95133	BcepGomr M6 PA73	100 % 51 % 48 %
Ad1	protein:vir:80389 protein:vir:95176 protein:vir:78383	BcepGomr PA73 SETP3	100 % 35 % 30 %
Hc1	protein:vir:80382 protein:vir:95145 protein:vir:97237	BcepGomr PA73 M6	100 % 25 % 23 %
Ne1	protein:vir:80425 protein:vir:97190 protein:vir:95157	BcepGomr M6 PA73	100 % 36 % 31 %
Tc1	protein:vir:80429 protein:vir:97211 protein:vir:95155	BcepGomr M6 PA73	100 % 47 % 31 %