Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : REQ2 | Genbank acc : NC_016652

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 82

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|NC_016652.1_cdsid_YP_005087050.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_016652.1_cdsid_YP_005087047.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_016652.1_cdsid_YP_005087046.1	Blast (e-value=1e-88)
MTP	12	lcl\|NC_016652.1_cdsid_YP_005087056.1	Blast (e-value=3e-15)
Sheath	NOT FOUND
Ad1	8	lcl\|NC_016652.1_cdsid_YP_005087052.1	HHsearch (proba=100.00%)
Hc1	9	lcl\|NC_016652.1_cdsid_YP_005087053.1	HHsearch (proba=97.78%)
Ne1	NOT FOUND
Tc1	11	lcl\|NC_016652.1_cdsid_YP_005087055.1	HHsearch (proba=99.90%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:108211 protein:vir:739 protein:vir:94771	Giles Tuc2009 phi LC3	55 % 17 % 20 %
Portal	protein:vir:108215 protein:vir:78161 protein:vir:95254	Giles Min1 Felix 01	56 % 41 % 21 %
TermL	protein:vir:2499 protein:vir:99915 protein:vir:8315	TM4 Halo Corndog	39 % 36 % 33 %
MTP	protein:vir:99006 protein:vir:98437 protein:vir:9580	Wildcat VWB SM1	23 % 20 % 19 %
Ad1	protein:vir:108221 protein:vir:9576 protein:vir:94761	Giles SM1 phi LC3	35 % 25 % 24 %
Hc1	protein:vir:8431 protein:vir:81216 protein:vir:8105	Omega BFK20 Che9c	28 % 29 % 28 %
Tc1	protein:vir:102609 protein:vir:105826 protein:vir:7994	Llij PMC Che8	22 % 22 % 22 %