Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : VWB | Genbank acc : NC_005345 | Aclame index mge :1589

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 61

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	39	lcl\|Aclame:protein:vir:98480\|NCBI_annot:ORFp38\|genbank:acc:NP_958280;genbank:gi:41057254;uniprot:Q38	HHsearch (proba=100.00%)
Portal	35	lcl\|Aclame:protein:vir:98444\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
TermL	34	lcl\|Aclame:protein:vir:98470\|NCBI_annot:hypothetical	Blast (e-value=0)
MTP	45	lcl\|Aclame:protein:vir:98437\|NCBI_annot:ORFp27\|genbank:acc:NP_958286;genbank:gi:41057260;uniprot:Q38	Blast (e-value=1e-104)
Sheath	NOT FOUND
Ad1	40	lcl\|Aclame:protein:vir:98481\|NCBI_annot:ORF3\|genbank:acc:NP_958281;genbank:gi:41057255;uniprot:Q3859	HHsearch (proba=100.00%)
Hc1	41	lcl\|Aclame:protein:vir:98467\|NCBI_annot:ORF4\|genbank:acc:NP_958282;genbank:gi:41057256;uniprot:Q3859	HHsearch (proba=100.00%)
Ne1	42	lcl\|Aclame:protein:vir:98468\|NCBI_annot:ORF5\|genbank:acc:NP_958283;genbank:gi:41057257;uniprot:Q3859	HHsearch (proba=100.00%)
Tc1	43	lcl\|Aclame:protein:vir:98426\|NCBI_annot:ORF6\|genbank:acc:NP_958284;genbank:gi:41057258;uniprot:Q3859	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:98480 protein:vir:96490 protein:vir:2736	VWB 2972 O1205	100 % 21 % 21 %
Portal	protein:vir:98444 protein:vir:2427 protein:vir:2341	VWB D29 Bxb1	100 % 22 % 21 %
TermL	protein:vir:98470 protein:vir:4222 protein:vir:7767	VWB L5 Bxz2	100 % 34 % 33 %
MTP	protein:vir:98437 protein:vir:8194 protein:vir:108237	VWB Che9d Giles	100 % 31 % 31 %
Ad1	protein:vir:98481 protein:vir:78478 protein:vir:78254	VWB U2 Bethlehem	100 % 27 % 27 %
Hc1	protein:vir:98467 protein:vir:81216 protein:vir:5977	VWB BFK20 SPP1	100 % 25 % 17 %
Ne1	protein:vir:98468 protein:vir:9763 protein:vir:94763	VWB 315.3 phi LC3	100 % 19 % 17 %
Tc1	protein:vir:98426 protein:vir:8193 protein:vir:9579	VWB Che9d SM1	100 % 26 % 18 %