Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Halo | Genbank acc : NC_008202 | Aclame index mge :1611

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 65

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|Aclame:protein:vir:99920\|NCBI_annot:gp7\|genbank:acc:YP_655524;genbank:gi:109392294;genbank:GeneI	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:99916\|NCBI_annot:gp3\|genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneI	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:99915\|NCBI_annot:gp2\|genbank:acc:YP_655519;genbank:gi:109392289;genbank:GeneI	Blast (e-value=0)
MTP	13	lcl\|Aclame:protein:vir:99926\|NCBI_annot:gp13\|genbank:acc:YP_655530;genbank:gi:109392300;genbank:Gene	Blast (e-value=1e-118)
Sheath	NOT FOUND
Ad1	9	lcl\|Aclame:protein:vir:99922\|NCBI_annot:gp9\|genbank:acc:YP_655526;genbank:gi:109392296;genbank:GeneI	HHsearch (proba=100.00%)
Hc1	10	lcl\|Aclame:protein:vir:99923\|NCBI_annot:gp10\|genbank:acc:YP_655527;genbank:gi:109392297;genbank:Gene	HHsearch (proba=100.00%)
Ne1	11	lcl\|Aclame:protein:vir:99924\|NCBI_annot:gp11\|genbank:acc:YP_655528;genbank:gi:109392298;genbank:Gene	HHsearch (proba=100.00%)
Tc1	12	lcl\|Aclame:protein:vir:99925\|NCBI_annot:gp12\|genbank:acc:YP_655529;genbank:gi:109392299;genbank:Gene	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:99920 protein:vir:8187 protein:vir:80684	Halo Che9d PA6	100 % 45 % 34 %
Portal	protein:vir:99916 protein:vir:8184 protein:vir:80680	Halo Che9d PA6	100 % 52 % 25 %
TermL	protein:vir:99915 protein:vir:2499 protein:vir:8315	Halo TM4 Corndog	100 % 58 % 35 %
MTP	protein:vir:99926 protein:vir:2509 protein:vir:9765	Halo TM4 315.3	100 % 62 % 27 %
Ad1	protein:vir:99922 protein:vir:80668 protein:vir:8189	Halo PA6 Che9d	100 % 44 % 43 %
Hc1	protein:vir:99923 protein:vir:2506 protein:vir:8190	Halo TM4 Che9d	100 % 45 % 23 %
Ne1	protein:vir:99924 protein:vir:2507 protein:vir:9763	Halo TM4 315.3	100 % 35 % 28 %
Tc1	protein:vir:99925 protein:vir:2508 protein:vir:98426	Halo TM4 VWB	100 % 40 % 18 %