Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Omega | Genbank acc : NC_004688 | Aclame index mge :155

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 4) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 237

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	15	lcl\|Aclame:protein:vir:8420\|NCBI_annot:gp15\|genbank:acc:NP_818316;genbank:gi:29566752;genbank:GeneID	HHsearch (proba=100.00%)
Portal	13	lcl\|Aclame:protein:vir:8418\|NCBI_annot:gp13\|genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID	HHsearch (proba=100.00%)
TermL	3	lcl\|Aclame:protein:vir:8408\|NCBI_annot:gp3\|genbank:acc:NP_818304;genbank:gi:29566740;genbank:GeneID:	Blast (e-value=1e-123)
MTP	31	lcl\|Aclame:protein:vir:8436\|NCBI_annot:gp31\|genbank:acc:NP_818332;genbank:gi:29566768;genbank:GeneID	Blast (e-value=0)
Sheath	NOT FOUND
Ad1	25	lcl\|Aclame:protein:vir:8430\|NCBI_annot:gp25\|genbank:acc:NP_818326;genbank:gi:29566762;genbank:GeneID	HHsearch (proba=100.00%)
Hc1	26	lcl\|Aclame:protein:vir:8431\|NCBI_annot:gp26\|genbank:acc:NP_818327;genbank:gi:29566763;genbank:GeneID	HHsearch (proba=100.00%)
Ne1	27	lcl\|Aclame:protein:vir:8432\|NCBI_annot:gp27\|genbank:acc:NP_818328;genbank:gi:29566764;genbank:GeneID	HHsearch (proba=100.00%)
Tc1	28	lcl\|Aclame:protein:vir:8433\|NCBI_annot:gp28\|genbank:acc:NP_818329;genbank:gi:29566765;genbank:GeneID	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:8420 protein:vir:80376 protein:vir:1433	Omega phi644-2 phiE125	100 % 21 % 21 %
Portal	protein:vir:8418 protein:vir:6240 protein:vir:1326	Omega phi-BT1 phi-C31	100 % 31 % 31 %
TermL	protein:vir:8408 protein:vir:99071 protein:vir:8098	Omega Wildcat Che9c	93 % 24 % 24 %
MTP	protein:vir:8436 protein:vir:101656 protein:vir:7861	Omega 244 CJW1	100 % 34 % 34 %
Ad1	protein:vir:8430 protein:vir:8326 protein:vir:8104	Omega Corndog Che9c	100 % 38 % 34 %
Hc1	protein:vir:8431 protein:vir:8328 protein:vir:101653	Omega Corndog 244	100 % 41 % 37 %
Ne1	protein:vir:8432 protein:vir:8330 protein:vir:8106	Omega Corndog Che9c	100 % 35 % 26 %
Tc1	protein:vir:8433 protein:vir:102609 protein:vir:105826	Omega Llij PMC	100 % 27 % 27 %