Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Min1 | Genbank acc : NC_009603 | Aclame index mge :1847

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 77

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	39	lcl\|Aclame:protein:vir:78101\|NCBI_annot:Clp	HHsearch (proba=100.00%)
Portal	38	lcl\|Aclame:protein:vir:78161\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
TermL	37	lcl\|Aclame:protein:vir:78144\|NCBI_annot:probable	Blast (e-value=0)
MTP	47	lcl\|Aclame:protein:vir:78115\|NCBI_annot:hypothetical	Blast (e-value=1e-148)
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	44	lcl\|Aclame:protein:vir:78106\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	45	lcl\|Aclame:protein:vir:78163\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	46	lcl\|Aclame:protein:vir:78124\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79548	cdtI	25 %
Portal	protein:vir:78161 protein:vir:108215 protein:vir:95254	Min1 Giles Felix 01	100 % 39 % 21 %
TermL	protein:vir:78144 protein:vir:81252 protein:vir:99071	Min1 BFK20 Wildcat	100 % 30 % 23 %
MTP	protein:vir:78115 protein:vir:9765 protein:vir:9580	Min1 315.3 SM1	100 % 21 % 21 %
Hc1	protein:vir:78106 protein:vir:81216	Min1 BFK20	100 % 20 %
Ne1	protein:vir:78163 protein:vir:81147 protein:vir:94538	Min1 Geobacillus virus E2 phiJL-1	100 % 23 % 20 %
Tc1	protein:vir:78124 protein:vir:98426 protein:vir:108220	Min1 VWB Giles	100 % 23 % 26 %