Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PMC | Genbank acc : NC_008205 | Aclame index mge :1636

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 4) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 104

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|Aclame:protein:vir:105822\|NCBI_annot:gp6\|genbank:acc:YP_655767;genbank:gi:109522090;genbank:Gene	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:105819\|NCBI_annot:gp3\|genbank:acc:YP_655764;genbank:gi:109522087;genbank:Gene	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:105818\|NCBI_annot:gp2\|genbank:acc:YP_655763;genbank:gi:109522086;genbank:Gene	Blast (e-value=0)
MTP	11	lcl\|Aclame:protein:vir:105827\|NCBI_annot:gp11\|genbank:acc:YP_655772;genbank:gi:109522095;genbank:Gen	Blast (e-value=1e-160)
Sheath	NOT FOUND
Ad1	7	lcl\|Aclame:protein:vir:105823\|NCBI_annot:gp7\|genbank:acc:YP_655768;genbank:gi:109522091;genbank:Gene	HHsearch (proba=100.00%)
Hc1	8	lcl\|Aclame:protein:vir:105824\|NCBI_annot:gp8\|genbank:acc:YP_655769;genbank:gi:109522092;genbank:Gene	HHsearch (proba=100.00%)
Ne1	9	lcl\|Aclame:protein:vir:105825\|NCBI_annot:gp9\|genbank:acc:YP_655770;genbank:gi:109522093;genbank:Gene	HHsearch (proba=100.00%)
Tc1	10	lcl\|Aclame:protein:vir:105826\|NCBI_annot:gp10\|genbank:acc:YP_655771;genbank:gi:109522094;genbank:Gen	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:102605 protein:vir:105822 protein:vir:7990	Llij PMC Che8	100 % 100 % 99 %
Portal	protein:vir:102602 protein:vir:105819 protein:vir:7987	Llij PMC Che8	100 % 100 % 99 %
TermL	protein:vir:7986 protein:vir:102601 protein:vir:105818	Che8 Llij PMC	99 % 98 % 98 %
MTP	protein:vir:102610 protein:vir:105827 protein:vir:7995	Llij PMC Che8	100 % 100 % 100 %
Ad1	protein:vir:102606 protein:vir:105823 protein:vir:7991	Llij PMC Che8	100 % 100 % 99 %
Hc1	protein:vir:102607 protein:vir:105824 protein:vir:7992	Llij PMC Che8	100 % 100 % 97 %
Ne1	protein:vir:102608 protein:vir:105825 protein:vir:7993	Llij PMC Che8	100 % 100 % 98 %
Tc1	protein:vir:102609 protein:vir:105826 protein:vir:7994	Llij PMC Che8	100 % 100 % 99 %