Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : BFK20 | Genbank acc : NC_009799 | Aclame index mge :1893

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 4) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 55

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|Aclame:protein:vir:81227\|NCBI_annot:gp6,	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:81218\|NCBI_annot:gp3,	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:81252\|NCBI_annot:gp2,	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	8	lcl\|Aclame:protein:vir:81255\|NCBI_annot:gp8\|genbank:acc:YP_001456738;genbank:gi:157168381;uniprot:Q9	HHsearch (proba=100.00%)
Hc1	9	lcl\|Aclame:protein:vir:81216\|NCBI_annot:gp9\|genbank:acc:YP_001456739;genbank:gi:157168382;uniprot:Q9	HHsearch (proba=100.00%)
Ne1	10	lcl\|Aclame:protein:vir:81251\|NCBI_annot:gp10\|genbank:acc:YP_001456740;genbank:gi:157168383;uniprot:Q	HHsearch (proba=100.00%)
Tc1	11	lcl\|Aclame:protein:vir:81228\|NCBI_annot:gp11\|genbank:acc:YP_001456741;genbank:gi:157168384;uniprot:Q	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:81227 protein:vir:101650 protein:vir:7855	BFK20 244 CJW1	100 % 28 % 28 %
Portal	protein:vir:81218 protein:vir:100150 protein:vir:105064	BFK20 phi1026b phiKO2	100 % 22 % 22 %
TermL	protein:vir:81252 protein:vir:78144 protein:vir:99071	BFK20 Min1 Wildcat	100 % 30 % 24 %
Ad1	protein:vir:81255 protein:vir:8430 protein:vir:8104	BFK20 Omega Che9c	100 % 26 % 25 %
Hc1	protein:vir:81216 protein:vir:98467 protein:vir:8105	BFK20 VWB Che9c	100 % 26 % 21 %
Ne1	protein:vir:81251 protein:vir:94538 protein:vir:94763	BFK20 phiJL-1 phi LC3	100 % 15 % 19 %
Tc1	protein:vir:81228 protein:vir:98426 protein:vir:81066	BFK20 VWB Xop411	100 % 21 % 18 %