Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 1 | Genbank acc : NC_015466

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 5) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 87

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	74	lcl\|NC_015466.1_cdsid_YP_004421842.1	HHsearch (proba=100.00%)
Portal	67	lcl\|NC_015466.1_cdsid_YP_004421835.1	HHsearch (proba=100.00%)
TermL	63	lcl\|NC_015466.1_cdsid_YP_004421831.1	Blast (e-value=6e-59)
MTP	78	lcl\|NC_015466.1_cdsid_YP_004421846.1	Blast (e-value=2e-56)
Sheath	NOT FOUND
Ad1	68	lcl\|NC_015466.1_cdsid_YP_004421836.1	HHsearch (proba=100.00%)
Hc1	69	lcl\|NC_015466.1_cdsid_YP_004421837.1	HHsearch (proba=97.39%)
Ne1	76	lcl\|NC_015466.1_cdsid_YP_004421844.1	HHsearch (proba=100.00%)
Tc1	77	lcl\|NC_015466.1_cdsid_YP_004421845.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Tc1<->Hc1	8	3
Ne1<->Hc1	7	2
Tc1<->Ad1	9	4
Ne1<->Ad1	8	3

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:99888 protein:vir:107882 protein:vir:79078	B3 BcepMu phiE255	24 % 22 % 21 %
Portal	protein:vir:95254 protein:vir:108215 protein:vir:78161	Felix 01 Giles Min1	22 % 20 % 19 %
TermL	protein:vir:105705 protein:vir:96782 protein:vir:78831	ES18 phiHSIC 80alpha	33 % 33 % 25 %
MTP	protein:vir:97240 protein:vir:80398 protein:vir:95133	M6 BcepGomr PA73	30 % 29 % 29 %
Ad1	protein:vir:94955 protein:vir:95176 protein:vir:97267	Xp15 PA73 M6	25 % 20 % 19 %
Hc1	protein:vir:80382 protein:vir:97237 protein:vir:104346	BcepGomr M6 RTP	19 % 16 % 18 %
Ne1	protein:vir:95157 protein:vir:97190 protein:vir:80425	PA73 M6 BcepGomr	31 % 30 % 29 %
Tc1	protein:vir:97211 protein:vir:80429 protein:vir:95155	M6 BcepGomr PA73	34 % 28 % 28 %