Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 34 lcl|Aclame:protein:vir:107882|NCBI_annot:gp34|genbank:acc:YP_024707;genbank:gi:48696944;genbank:Gene HHsearch (proba=100.00%)
Portal 29 lcl|Aclame:protein:vir:107880|NCBI_annot:gp29|genbank:acc:YP_024702;genbank:gi:48696939;genbank:Gene HHsearch (proba=100.00%)
TermL 28 lcl|Aclame:protein:vir:107886|NCBI_annot:gp28|genbank:acc:YP_024701;genbank:gi:48696938;genbank:Gene Blast (e-value=0)
MTP 40 lcl|Aclame:protein:vir:107863|NCBI_annot:gp40|genbank:acc:YP_024713;genbank:gi:48696950;genbank:Gene Blast (e-value=1e-101)
Sheath 39 lcl|Aclame:protein:vir:107865|NCBI_annot:gp39|genbank:acc:YP_024712;genbank:gi:48696949;genbank:Gene HHsearch (proba=100.00%)
Ad1 36 lcl|Aclame:protein:vir:107864|NCBI_annot:gp36|genbank:acc:YP_024709;genbank:gi:48696946;genbank:Gene HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 31 lcl|Aclame:protein:vir:107851|NCBI_annot:gp31|genbank:acc:YP_024704;genbank:gi:48696941;genbank:Gene HHsearch (proba=100.00%)
Tc1 37 lcl|Aclame:protein:vir:107857|NCBI_annot:gp37|genbank:acc:YP_024710;genbank:gi:48696947;genbank:Gene HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ne1<->Ad1 5 4
Ne1<->Tc1 6 2


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:107882
protein:vir:79078
protein:vir:99888
BcepMu
phiE255
B3
100 %
95 %
25 %
Portal protein:vir:107880
protein:vir:79063
protein:vir:79233
BcepMu
phiE255
Phage MP22
100 %
97 %
25 %
TermL protein:vir:107886
protein:vir:79096
protein:vir:1985
BcepMu
phiE255
Mu
100 %
98 %
46 %
MTP protein:vir:107863
protein:vir:79072
protein:vir:5712
BcepMu
phiE255
L-413C
100 %
99 %
27 %
Sheath protein:vir:107865
protein:vir:79092
protein:vir:79141
BcepMu
phiE255
RSA1
100 %
99 %
35 %
Ad1 protein:vir:107864
protein:vir:79074
protein:vir:79253
BcepMu
phiE255
Phage MP22
100 %
99 %
31 %
Ne1 protein:vir:107851
protein:vir:79091
protein:vir:103841
BcepMu
phiE255
D3112
100 %
92 %
41 %
Tc1 protein:vir:107857
protein:vir:79065
protein:vir:488
BcepMu
phiE255
P27
100 %
99 %
24 %