Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : BcepMu | Genbank acc : NC_005882 | Aclame index mge :1565

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 8) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 53

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	34	lcl\|Aclame:protein:vir:107882\|NCBI_annot:gp34\|genbank:acc:YP_024707;genbank:gi:48696944;genbank:Gene	HHsearch (proba=100.00%)
Portal	29	lcl\|Aclame:protein:vir:107880\|NCBI_annot:gp29\|genbank:acc:YP_024702;genbank:gi:48696939;genbank:Gene	HHsearch (proba=100.00%)
TermL	28	lcl\|Aclame:protein:vir:107886\|NCBI_annot:gp28\|genbank:acc:YP_024701;genbank:gi:48696938;genbank:Gene	Blast (e-value=0)
MTP	40	lcl\|Aclame:protein:vir:107863\|NCBI_annot:gp40\|genbank:acc:YP_024713;genbank:gi:48696950;genbank:Gene	Blast (e-value=1e-101)
Sheath	39	lcl\|Aclame:protein:vir:107865\|NCBI_annot:gp39\|genbank:acc:YP_024712;genbank:gi:48696949;genbank:Gene	HHsearch (proba=100.00%)
Ad1	36	lcl\|Aclame:protein:vir:107864\|NCBI_annot:gp36\|genbank:acc:YP_024709;genbank:gi:48696946;genbank:Gene	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	31	lcl\|Aclame:protein:vir:107851\|NCBI_annot:gp31\|genbank:acc:YP_024704;genbank:gi:48696941;genbank:Gene	HHsearch (proba=100.00%)
Tc1	37	lcl\|Aclame:protein:vir:107857\|NCBI_annot:gp37\|genbank:acc:YP_024710;genbank:gi:48696947;genbank:Gene	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Ad1	5	4
Ne1<->Tc1	6	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:107882 protein:vir:79078 protein:vir:99888	BcepMu phiE255 B3	100 % 95 % 25 %
Portal	protein:vir:107880 protein:vir:79063 protein:vir:79233	BcepMu phiE255 Phage MP22	100 % 97 % 25 %
TermL	protein:vir:107886 protein:vir:79096 protein:vir:1985	BcepMu phiE255 Mu	100 % 98 % 46 %
MTP	protein:vir:107863 protein:vir:79072 protein:vir:5712	BcepMu phiE255 L-413C	100 % 99 % 27 %
Sheath	protein:vir:107865 protein:vir:79092 protein:vir:79141	BcepMu phiE255 RSA1	100 % 99 % 35 %
Ad1	protein:vir:107864 protein:vir:79074 protein:vir:79253	BcepMu phiE255 Phage MP22	100 % 99 % 31 %
Ne1	protein:vir:107851 protein:vir:79091 protein:vir:103841	BcepMu phiE255 D3112	100 % 92 % 41 %
Tc1	protein:vir:107857 protein:vir:79065 protein:vir:488	BcepMu phiE255 P27	100 % 99 % 24 %