Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiE255 | Genbank acc : NC_009237 | Aclame index mge :1862

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 8) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 55

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	8	lcl\|Aclame:protein:vir:79078\|NCBI_annot:gp8\|genbank:acc:YP_001111208;genbank:gi:134288798;genbank:Ge	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:79063\|NCBI_annot:gp3\|genbank:acc:YP_001111203;genbank:gi:134288841;genbank:Ge	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:79096\|NCBI_annot:gp2\|genbank:acc:YP_001111202;genbank:gi:134288795;genbank:Ge	Blast (e-value=0)
MTP	14	lcl\|Aclame:protein:vir:79072\|NCBI_annot:gp14,	Blast (e-value=1e-101)
Sheath	13	lcl\|Aclame:protein:vir:79092\|NCBI_annot:gp13,	HHsearch (proba=100.00%)
Ad1	10	lcl\|Aclame:protein:vir:79074\|NCBI_annot:gp10,	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	5	lcl\|Aclame:protein:vir:79091\|NCBI_annot:gp5,	HHsearch (proba=100.00%)
Tc1	11	lcl\|Aclame:protein:vir:79065\|NCBI_annot:gp11\|genbank:acc:YP_001111211;genbank:gi:134288825;genbank:G	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Ad1	5	4
Ne1<->Tc1	6	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79078 protein:vir:107882 protein:vir:99888	phiE255 BcepMu B3	100 % 95 % 26 %
Portal	protein:vir:79063 protein:vir:107880 protein:vir:79233	phiE255 BcepMu Phage MP22	100 % 97 % 25 %
TermL	protein:vir:79096 protein:vir:107886 protein:vir:1985	phiE255 BcepMu Mu	100 % 98 % 46 %
MTP	protein:vir:79072 protein:vir:107863 protein:vir:98546	phiE255 BcepMu PSP3	100 % 99 % 27 %
Sheath	protein:vir:79092 protein:vir:107865 protein:vir:79141	phiE255 BcepMu RSA1	100 % 99 % 35 %
Ad1	protein:vir:79074 protein:vir:107864 protein:vir:79253	phiE255 BcepMu Phage MP22	100 % 99 % 32 %
Ne1	protein:vir:79091 protein:vir:107851 protein:vir:103841	phiE255 BcepMu D3112	100 % 92 % 38 %
Tc1	protein:vir:79065 protein:vir:107857 protein:vir:488	phiE255 BcepMu P27	100 % 99 % 23 %