Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : BL3 | Genbank acc : NC_015254

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 67

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	9	lcl\|NC_015254.1_cdsid_YP_004301541.1	HHsearch (proba=100.00%)
Portal	4	lcl\|NC_015254.1_cdsid_YP_004301536.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_015254.1_cdsid_YP_004301534.1	Blast (e-value=1e-130)
MTP	16	lcl\|NC_015254.1_cdsid_YP_004301548.1	Blast (e-value=3e-26)
Sheath	NOT FOUND
Ad1	10	lcl\|NC_015254.1_cdsid_YP_004301542.1	HHsearch (proba=100.00%)
Hc1	11	lcl\|NC_015254.1_cdsid_YP_004301543.1	HHsearch (proba=100.00%)
Ne1	12	lcl\|NC_015254.1_cdsid_YP_004301544.1	HHsearch (proba=100.00%)
Tc1	13	lcl\|NC_015254.1_cdsid_YP_004301545.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:5974 protein:vir:102944 protein:vir:78387	SPP1 EJ-1 SETP3	50 % 41 % 31 %
Portal	protein:vir:106571 protein:vir:106639 protein:vir:99781	Lj965 187 phiETA2	44 % 31 % 29 %
TermL	protein:vir:5954 protein:vir:105297 protein:vir:107098	SPP1 PH15 CNPH82	57 % 54 % 54 %
MTP	protein:vir:106581 protein:vir:100083 protein:vir:100241	Lj965 phi1026b Bcep176	39 % 23 % 23 %
Ad1	protein:vir:106583 protein:vir:99517 protein:vir:95774	Lj965 Lj928 SMP	32 % 30 % 30 %
Hc1	protein:vir:106552 protein:vir:93599 protein:vir:95261	Lj965 phi 4795 Felix 01	53 % 6 % 21 %
Ne1	protein:vir:106570 protein:vir:5978 protein:vir:105330	Lj965 SPP1 PH15	44 % 26 % 26 %
Tc1	protein:vir:106554 protein:vir:102086 protein:vir:102888	Lj965 Fah Cherry	30 % 18 % 18 %