Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Lj928 | Genbank acc : NC_005354 | Aclame index mge :1559

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 50

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	33	lcl\|Aclame:protein:vir:99523\|NCBI_annot:putative	HHsearch (proba=100.00%)
Portal	28	lcl\|Aclame:protein:vir:99522\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	27	lcl\|Aclame:protein:vir:99534\|NCBI_annot:putative	Blast (e-value=0)
MTP	38	lcl\|Aclame:protein:vir:99519\|NCBI_annot:putative	Blast (e-value=1e-110)
Sheath	NOT FOUND
Ad1	34	lcl\|Aclame:protein:vir:99517\|NCBI_annot:putative	HHsearch (proba=100.00%)
Hc1	35	lcl\|Aclame:protein:vir:99505\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ne1	36	lcl\|Aclame:protein:vir:99528\|NCBI_annot:putative	HHsearch (proba=100.00%)
Tc1	37	lcl\|Aclame:protein:vir:99537\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:99523 protein:vir:78920 protein:vir:79008	Lj928 A006 phiC2	100 % 46 % 27 %
Portal	protein:vir:99522 protein:vir:3964 protein:vir:3609	Lj928 ul36 TP901-1	100 % 34 % 34 %
TermL	protein:vir:99534 protein:vir:106641 protein:vir:78831	Lj928 187 80alpha	100 % 60 % 59 %
MTP	protein:vir:99519 protein:vir:96484 protein:vir:2742	Lj928 2972 O1205	100 % 35 % 35 %
Ad1	protein:vir:99517 protein:vir:3970 protein:vir:3615	Lj928 ul36 TP901-1	100 % 37 % 37 %
Hc1	protein:vir:99505 protein:vir:742 protein:vir:3616	Lj928 Tuc2009 TP901-1	100 % 28 % 26 %
Ne1	protein:vir:99528 protein:vir:3617 protein:vir:98409	Lj928 TP901-1 ul36	100 % 40 % 38 %
Tc1	protein:vir:99537 protein:vir:95765 protein:vir:744	Lj928 SMP Tuc2009	100 % 25 % 24 %