Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 47 lcl|Aclame:protein:vir:99749|NCBI_annot:head HHsearch (proba=100.00%)
Portal 43 lcl|Aclame:protein:vir:99781|NCBI_annot:portal HHsearch (proba=100.00%)
TermL 42 lcl|Aclame:protein:vir:99776|NCBI_annot:large Blast (e-value=0)
MTP 53 lcl|Aclame:protein:vir:99775|NCBI_annot:hypothetical Blast (e-value=1e-113)
Sheath NOT FOUND
Ad1 49 lcl|Aclame:protein:vir:99796|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Hc1 50 lcl|Aclame:protein:vir:99782|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ne1 51 lcl|Aclame:protein:vir:99744|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Tc1 52 lcl|Aclame:protein:vir:99769|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:103955
protein:vir:99749
protein:vir:97148
phiNM
phiETA2
85
100 %
100 %
99 %
Portal protein:vir:99781
protein:vir:103951
protein:vir:96240
phiETA2
phiNM
69
100 %
98 %
98 %
TermL protein:vir:103950
protein:vir:99776
protein:vir:78831
phiNM
phiETA2
80alpha
100 %
100 %
99 %
MTP protein:vir:99775
protein:vir:103919
protein:vir:96224
phiETA2
phiNM
69
100 %
99 %
99 %
Ad1 protein:vir:78849
protein:vir:103957
protein:vir:97145
80alpha
phiNM
85
100 %
100 %
100 %
Hc1 protein:vir:99782
protein:vir:78844
protein:vir:103916
phiETA2
80alpha
phiNM
100 %
98 %
95 %
Ne1 protein:vir:99744
protein:vir:78858
protein:vir:103917
phiETA2
80alpha
phiNM
100 %
98 %
98 %
Tc1 protein:vir:103918
protein:vir:97143
protein:vir:96217
phiNM
85
69
100 %
100 %
100 %