Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : SMP | Genbank acc : NC_008721 | Aclame index mge :1578

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 48

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	40	lcl\|Aclame:protein:vir:95763\|NCBI_annot:head	HHsearch (proba=100.00%)
Portal	33	lcl\|Aclame:protein:vir:95806\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	32	lcl\|Aclame:protein:vir:95761\|NCBI_annot:terminase	Blast (e-value=0)
MTP	45	lcl\|Aclame:protein:vir:95799\|NCBI_annot:major	Blast (e-value=1e-104)
Sheath	NOT FOUND
Ad1	42	lcl\|Aclame:protein:vir:95774\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	43	lcl\|Aclame:protein:vir:95789\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	44	lcl\|Aclame:protein:vir:95765\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:95763 protein:vir:97148 protein:vir:78830	SMP 85 80alpha	100 % 50 % 49 %
Portal	protein:vir:95806 protein:vir:9306 protein:vir:78805	SMP phi 11 80alpha	100 % 40 % 39 %
TermL	protein:vir:95761 protein:vir:97165 protein:vir:94525	SMP 85 phiJL-1	100 % 62 % 41 %
MTP	protein:vir:95799 protein:vir:3973 protein:vir:745	SMP ul36 Tuc2009	100 % 30 % 30 %
Ad1	protein:vir:95774 protein:vir:96488 protein:vir:2738	SMP 2972 O1205	100 % 36 % 35 %
Ne1	protein:vir:95789 protein:vir:3617 protein:vir:98409	SMP TP901-1 ul36	100 % 29 % 29 %
Tc1	protein:vir:95765 protein:vir:96485 protein:vir:4907	SMP 2972 Sfi11	100 % 31 % 29 %