Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Lj965 | Genbank acc : NC_005355 | Aclame index mge :1598

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 46

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	30	lcl\|Aclame:protein:vir:106590\|NCBI_annot:putative	HHsearch (proba=100.00%)
Portal	25	lcl\|Aclame:protein:vir:106571\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	24	lcl\|Aclame:protein:vir:106551\|NCBI_annot:putative	Blast (e-value=0)
MTP	35	lcl\|Aclame:protein:vir:106581\|NCBI_annot:putative	Blast (e-value=3e-91)
Sheath	NOT FOUND
Ad1	31	lcl\|Aclame:protein:vir:106583\|NCBI_annot:putative	HHsearch (proba=100.00%)
Hc1	32	lcl\|Aclame:protein:vir:106552\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ne1	33	lcl\|Aclame:protein:vir:106570\|NCBI_annot:putative	HHsearch (proba=100.00%)
Tc1	34	lcl\|Aclame:protein:vir:106554\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:106590 protein:vir:96490 protein:vir:4902	Lj965 2972 Sfi11	100 % 27 % 27 %
Portal	protein:vir:106571 protein:vir:106639 protein:vir:78805	Lj965 187 80alpha	100 % 30 % 27 %
TermL	protein:vir:106551 protein:vir:102941 protein:vir:93748	Lj965 EJ-1 55	100 % 55 % 27 %
MTP	protein:vir:106581 protein:vir:100083 protein:vir:1439	Lj965 phi1026b phiE125	100 % 27 % 27 %
Ad1	protein:vir:106583 protein:vir:94507 protein:vir:9928	Lj965 phiJL-1 315.6	100 % 26 % 23 %
Hc1	protein:vir:106552 protein:vir:95261 protein:vir:4955	Lj965 Felix 01 Sfi19	100 % 17 % 12 %
Ne1	protein:vir:106570 protein:vir:100075 protein:vir:4906	Lj965 phi1026b Sfi11	100 % 24 % 24 %
Tc1	protein:vir:106554 protein:vir:102086 protein:vir:102888	Lj965 Fah Cherry	100 % 23 % 23 %