Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 187 | Genbank acc : NC_007047 | Aclame index mge :1557

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 77

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|Aclame:protein:vir:106647\|NCBI_annot:ORF011\|genbank:acc:YP_239493;genbank:gi:66395226;genbank:Ge	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:106639\|NCBI_annot:ORF003\|genbank:acc:YP_239490;genbank:gi:66395218;genbank:Ge	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:106641\|NCBI_annot:ORF005\|genbank:acc:YP_239489;genbank:gi:66395220;genbank:Ge	Blast (e-value=0)
MTP	12	lcl\|Aclame:protein:vir:106658\|NCBI_annot:ORF022\|genbank:acc:YP_239499;genbank:gi:66395237;genbank:Ge	Blast (e-value=1e-126)
Sheath	NOT FOUND
Ad1	8	lcl\|Aclame:protein:vir:106596\|NCBI_annot:ORF042\|genbank:acc:YP_239495;genbank:gi:66395254;genbank:Ge	HHsearch (proba=100.00%)
Hc1	9	lcl\|Aclame:protein:vir:106629\|NCBI_annot:ORF107\|genbank:acc:YP_239496;genbank:gi:66395285;genbank:Ge	HHsearch (proba=100.00%)
Ne1	10	lcl\|Aclame:protein:vir:106623\|NCBI_annot:ORF049\|genbank:acc:YP_239497;genbank:gi:66395260;genbank:Ge	HHsearch (proba=100.00%)
Tc1	11	lcl\|Aclame:protein:vir:106593\|NCBI_annot:ORF039\|genbank:acc:YP_239498;genbank:gi:66395251;genbank:Ge	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:106647 protein:vir:9875 protein:vir:9927	187 315.5 315.6	98 % 37 % 32 %
Portal	protein:vir:106639 protein:vir:78805 protein:vir:103951	187 80alpha phiNM	100 % 40 % 40 %
TermL	protein:vir:106641 protein:vir:78831 protein:vir:96370	187 80alpha 53	100 % 85 % 85 %
MTP	protein:vir:106658 protein:vir:9314 protein:vir:78825	187 phi 11 80alpha	100 % 59 % 58 %
Ad1	protein:vir:106596 protein:vir:78849 protein:vir:103957	187 80alpha phiNM	100 % 47 % 47 %
Hc1	protein:vir:106629 protein:vir:78844 protein:vir:99782	187 80alpha phiETA2	100 % 45 % 45 %
Ne1	protein:vir:106623 protein:vir:78858 protein:vir:103917	187 80alpha phiNM	100 % 57 % 57 %
Tc1	protein:vir:106593 protein:vir:78854 protein:vir:103918	187 80alpha phiNM	100 % 39 % 39 %