Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiSASD1 | Genbank acc : NC_014229

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 43

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|NC_014229.1_cdsid_YP_003714734.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_014229.1_cdsid_YP_003714730.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_014229.1_cdsid_YP_003714729.1	Blast (e-value=1e-37)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	9	lcl\|NC_014229.1_cdsid_YP_003714736.1	HHsearch (proba=100.00%)
Hc1	10	lcl\|NC_014229.1_cdsid_YP_003714737.1	HHsearch (proba=99.86%)
Ne1	12	lcl\|NC_014229.1_cdsid_YP_003714739.1	HHsearch (proba=100.00%)
Tc1	13	lcl\|NC_014229.1_cdsid_YP_003714740.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:102605 protein:vir:105822 protein:vir:7990	Llij PMC Che8	36 % 36 % 35 %
Portal	protein:vir:4223 protein:vir:2427 protein:vir:78227	L5 D29 Bethlehem	28 % 27 % 26 %
TermL	protein:vir:98470 protein:vir:2426 protein:vir:104081	VWB D29 Che12	28 % 27 % 26 %
Ad1	protein:vir:8430 protein:vir:101652 protein:vir:7857	Omega 244 CJW1	23 % 22 % 22 %
Hc1	protein:vir:4459 protein:vir:1890 protein:vir:193	ST64B HK022 HK97	21 % 23 % 20 %
Ne1	protein:vir:96121 protein:vir:105916 protein:vir:94108	37 phiETA3 96	33 % 31 % 31 %
Tc1	protein:vir:5979 protein:vir:96125 protein:vir:96894	SPP1 37 EW	28 % 22 % 22 %