Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 7 lcl|NC_014229.1_cdsid_YP_003714734.1 HHsearch (proba=100.00%)
Portal 3 lcl|NC_014229.1_cdsid_YP_003714730.1 HHsearch (proba=100.00%)
TermL 2 lcl|NC_014229.1_cdsid_YP_003714729.1 Blast (e-value=1e-37)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 9 lcl|NC_014229.1_cdsid_YP_003714736.1 HHsearch (proba=100.00%)
Hc1 10 lcl|NC_014229.1_cdsid_YP_003714737.1 HHsearch (proba=99.86%)
Ne1 12 lcl|NC_014229.1_cdsid_YP_003714739.1 HHsearch (proba=100.00%)
Tc1 13 lcl|NC_014229.1_cdsid_YP_003714740.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:102605
protein:vir:105822
protein:vir:7990
Llij
PMC
Che8
36 %
36 %
35 %
Portal protein:vir:4223
protein:vir:2427
protein:vir:78227
L5
D29
Bethlehem
28 %
27 %
26 %
TermL protein:vir:98470
protein:vir:2426
protein:vir:104081
VWB
D29
Che12
28 %
27 %
26 %
Ad1 protein:vir:8430
protein:vir:101652
protein:vir:7857
Omega
244
CJW1
23 %
22 %
22 %
Hc1 protein:vir:4459
protein:vir:1890
protein:vir:193
ST64B
HK022
HK97
21 %
23 %
20 %
Ne1 protein:vir:96121
protein:vir:105916
protein:vir:94108
37
phiETA3
96
33 %
31 %
31 %
Tc1 protein:vir:5979
protein:vir:96125
protein:vir:96894
SPP1
37
EW
28 %
22 %
22 %