Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : D29 | Genbank acc : NC_001900 | Aclame index mge :52

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 79

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	14	lcl\|Aclame:protein:vir:2430\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	11	lcl\|Aclame:protein:vir:2427\|NCBI_annot:gp14\|genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:	HHsearch (proba=100.00%)
TermL	10	lcl\|Aclame:protein:vir:2426\|NCBI_annot:gp13\|genbank:acc:NP_046828;genbank:gi:9630396;genbank:GeneID:	Blast (e-value=0)
MTP	21	lcl\|Aclame:protein:vir:2437\|NCBI_annot:major	Blast (e-value=1e-115)
Sheath	NOT FOUND
Ad1	16	lcl\|Aclame:protein:vir:2432\|NCBI_annot:gp19\|genbank:acc:NP_046834;genbank:gi:9630402;genbank:GeneID:	HHsearch (proba=100.00%)
Hc1	18	lcl\|Aclame:protein:vir:2434\|NCBI_annot:gp20\|genbank:acc:NP_046836;genbank:gi:9630404;genbank:GeneID:	HHsearch (proba=100.00%)
Ne1	19	lcl\|Aclame:protein:vir:2435\|NCBI_annot:gp21\|genbank:acc:NP_046837;genbank:gi:9630405;genbank:GeneID:	HHsearch (proba=100.00%)
Tc1	20	lcl\|Aclame:protein:vir:2436\|NCBI_annot:gp22\|genbank:acc:NP_046838;genbank:gi:9630406;genbank:GeneID:	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:2430 protein:vir:104085 protein:vir:4226	D29 Che12 L5	100 % 85 % 81 %
Portal	protein:vir:2427 protein:vir:104082 protein:vir:4223	D29 Che12 L5	100 % 92 % 90 %
TermL	protein:vir:2426 protein:vir:4222 protein:vir:104081	D29 L5 Che12	100 % 91 % 88 %
MTP	protein:vir:2437 protein:vir:4232 protein:vir:104093	D29 L5 Che12	100 % 92 % 88 %
Ad1	protein:vir:2432 protein:vir:104088 protein:vir:4228	D29 Che12 L5	100 % 83 % 83 %
Hc1	protein:vir:2434 protein:vir:104090 protein:vir:4229	D29 Che12 L5	100 % 87 % 86 %
Ne1	protein:vir:2435 protein:vir:4230 protein:vir:104091	D29 L5 Che12	100 % 79 % 66 %
Tc1	protein:vir:2436 protein:vir:4231 protein:vir:104092	D29 L5 Che12	100 % 83 % 79 %