Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : L5 | Genbank acc : NC_001335 | Aclame index mge :89

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 85

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	14	lcl\|Aclame:protein:vir:4226\|NCBI_annot:observed	HHsearch (proba=100.00%)
Portal	11	lcl\|Aclame:protein:vir:4223\|NCBI_annot:predicted	HHsearch (proba=100.00%)
TermL	10	lcl\|Aclame:protein:vir:4222\|NCBI_annot:predicted	Blast (e-value=0)
MTP	20	lcl\|Aclame:protein:vir:4232\|NCBI_annot:observed	Blast (e-value=1e-115)
Sheath	NOT FOUND
Ad1	16	lcl\|Aclame:protein:vir:4228\|NCBI_annot:predicted	HHsearch (proba=100.00%)
Hc1	17	lcl\|Aclame:protein:vir:4229\|NCBI_annot:predicted	HHsearch (proba=100.00%)
Ne1	18	lcl\|Aclame:protein:vir:4230\|NCBI_annot:predicted	HHsearch (proba=100.00%)
Tc1	19	lcl\|Aclame:protein:vir:4231\|NCBI_annot:predicted	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:4226 protein:vir:104085 protein:vir:2430	L5 Che12 D29	100 % 84 % 80 %
Portal	protein:vir:4223 protein:vir:2427 protein:vir:104082	L5 D29 Che12	100 % 90 % 88 %
TermL	protein:vir:4222 protein:vir:2426 protein:vir:104081	L5 D29 Che12	97 % 91 % 90 %
MTP	protein:vir:4232 protein:vir:104093 protein:vir:2437	L5 Che12 D29	100 % 93 % 90 %
Ad1	protein:vir:4228 protein:vir:2432 protein:vir:104088	L5 D29 Che12	100 % 84 % 82 %
Hc1	protein:vir:4229 protein:vir:104090 protein:vir:2434	L5 Che12 D29	100 % 93 % 86 %
Ne1	protein:vir:4230 protein:vir:2435 protein:vir:104091	L5 D29 Che12	100 % 79 % 63 %
Tc1	protein:vir:4231 protein:vir:2436 protein:vir:104092	L5 D29 Che12	100 % 83 % 78 %