Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 244 | Genbank acc : NC_008194 | Aclame index mge :1515

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 4) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 142

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	13	lcl\|Aclame:protein:vir:101650\|NCBI_annot:gp13\|genbank:acc:YP_654768;genbank:gi:109302766;genbank:Gen	HHsearch (proba=100.00%)
Portal	11	lcl\|Aclame:protein:vir:101648\|NCBI_annot:gp11\|genbank:acc:YP_654766;genbank:gi:109302764;genbank:Gen	HHsearch (proba=100.00%)
TermL	9	lcl\|Aclame:protein:vir:101786\|NCBI_annot:gp9\|genbank:acc:YP_654764;genbank:gi:109302762;genbank:Gene	Blast (e-value=0)
MTP	19	lcl\|Aclame:protein:vir:101656\|NCBI_annot:gp19\|genbank:acc:YP_654774;genbank:gi:109302772;genbank:Gen	Blast (e-value=0)
Sheath	NOT FOUND
Ad1	15	lcl\|Aclame:protein:vir:101652\|NCBI_annot:gp15\|genbank:acc:YP_654770;genbank:gi:109302768;genbank:Gen	HHsearch (proba=100.00%)
Hc1	16	lcl\|Aclame:protein:vir:101653\|NCBI_annot:gp16\|genbank:acc:YP_654771;genbank:gi:109302769;genbank:Gen	HHsearch (proba=100.00%)
Ne1	17	lcl\|Aclame:protein:vir:101654\|NCBI_annot:gp17\|genbank:acc:YP_654772;genbank:gi:109302770;genbank:Gen	HHsearch (proba=100.00%)
Tc1	18	lcl\|Aclame:protein:vir:101655\|NCBI_annot:gp18\|genbank:acc:YP_654773;genbank:gi:109302771;genbank:Gen	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:101650 protein:vir:7855 protein:vir:81227	244 CJW1 BFK20	100 % 100 % 29 %
Portal	protein:vir:101648 protein:vir:7853 protein:vir:102118	244 CJW1 phiSM101	100 % 99 % 23 %
TermL	protein:vir:101786 protein:vir:7851 protein:vir:1379	244 CJW1 phi3626	100 % 97 % 27 %
MTP	protein:vir:101656 protein:vir:7861 protein:vir:8436	244 CJW1 Omega	100 % 100 % 34 %
Ad1	protein:vir:101652 protein:vir:7857 protein:vir:8104	244 CJW1 Che9c	100 % 100 % 24 %
Hc1	protein:vir:101653 protein:vir:7858 protein:vir:8431	244 CJW1 Omega	100 % 100 % 37 %
Ne1	protein:vir:101654 protein:vir:7859 protein:vir:7993	244 CJW1 Che8	100 % 100 % 29 %
Tc1	protein:vir:101655 protein:vir:7860 protein:vir:102609	244 CJW1 Llij	100 % 100 % 28 %