Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiFL3A | Genbank acc : NC_013648

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 64

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	48	lcl\|NC_013648.1_cdsid_YP_003347610.1	HHsearch (proba=100.00%)
Portal	44	lcl\|NC_013648.1_cdsid_YP_003347606.1	HHsearch (proba=100.00%)
TermL	42	lcl\|NC_013648.1_cdsid_YP_003347604.1	Blast (e-value=1e-103)
MTP	53	lcl\|NC_013648.1_cdsid_YP_003347615.1	Blast (e-value=4e-26)
Sheath	NOT FOUND
Ad1	49	lcl\|NC_013648.1_cdsid_YP_003347611.1	HHsearch (proba=100.00%)
Hc1	50	lcl\|NC_013648.1_cdsid_YP_003347612.1	HHsearch (proba=100.00%)
Ne1	51	lcl\|NC_013648.1_cdsid_YP_003347613.1	HHsearch (proba=100.00%)
Tc1	52	lcl\|NC_013648.1_cdsid_YP_003347614.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:5974 protein:vir:102944 protein:vir:80446	SPP1 EJ-1 BcepGomr	57 % 43 % 35 %
Portal	protein:vir:106571 protein:vir:9922 protein:vir:106639	Lj965 315.6 187	47 % 30 % 30 %
TermL	protein:vir:96840 protein:vir:96147 protein:vir:105297	EW 37 PH15	70 % 70 % 69 %
MTP	protein:vir:106581 protein:vir:100083 protein:vir:100241	Lj965 phi1026b Bcep176	38 % 26 % 25 %
Ad1	protein:vir:106583 protein:vir:9928 protein:vir:94507	Lj965 315.6 phiJL-1	36 % 25 % 24 %
Hc1	protein:vir:106552 protein:vir:93599 protein:vir:95261	Lj965 phi 4795 Felix 01	45 % 10 % 20 %
Ne1	protein:vir:106570 protein:vir:9930 protein:vir:96486	Lj965 315.6 2972	36 % 25 % 24 %
Tc1	protein:vir:106554 protein:vir:102086 protein:vir:102888	Lj965 Fah Cherry	36 % 17 % 17 %