Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Cd | Genbank acc : NC_010355

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 4) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 95

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	33	lcl\|NC_010355.1_cdsid_YP_001686874.1	HHsearch (proba=100.00%)
Portal	31	lcl\|NC_010355.1_cdsid_YP_001686872.1	HHsearch (proba=100.00%)
TermL	29	lcl\|NC_010355.1_cdsid_YP_001686870.1	Blast (e-value=1e-40)
MTP	40	lcl\|NC_010355.1_cdsid_YP_001686881.1	Blast (e-value=4e-27)
Sheath	NOT FOUND
Ad1	37	lcl\|NC_010355.1_cdsid_YP_001686878.1	HHsearch (proba=100.00%)
Hc1	38	lcl\|NC_010355.1_cdsid_YP_001686879.1	HHsearch (proba=98.90%)
Ne1	42	lcl\|NC_010355.1_cdsid_YP_001686883.1	HHsearch (proba=99.60%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Hc1	4	2
Ne1<->Ad1	5	3

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:4456 protein:vir:485 protein:vir:100247	ST64B P27 Bcep176	39 % 39 % 35 %
Portal	protein:vir:80333 protein:vir:1431 protein:vir:100150	phi644-2 phiE125 phi1026b	31 % 31 % 30 %
TermL	protein:vir:100097 protein:vir:481 protein:vir:81178	phi1026b P27 Geobacillus virus E2	25 % 25 % 24 %
MTP	protein:vir:97240 protein:vir:95133 protein:vir:80398	M6 PA73 BcepGomr	25 % 25 % 21 %
Ad1	protein:vir:1435 protein:vir:80320 protein:vir:8430	phiE125 phi644-2 Omega	16 % 15 % 18 %
Hc1	protein:vir:97237 protein:vir:80382 protein:vir:107669	M6 BcepGomr T1	19 % 17 % 20 %
Ne1	protein:vir:103280 protein:vir:94994 protein:vir:79638	JK06 KS7 TLS	23 % 20 % 19 %