Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Xop411 | Genbank acc : NC_009543 | Aclame index mge :1889

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 3) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 58

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|Aclame:protein:vir:81070\|NCBI_annot:p09\|genbank:acc:YP_001285679;genbank:gi:148727187;genbank:Ge	HHsearch (proba=100.00%)
Portal	4	lcl\|Aclame:protein:vir:81072\|NCBI_annot:p07\|genbank:acc:YP_001285677;genbank:gi:148727185;genbank:Ge	HHsearch (proba=100.00%)
TermL	3	lcl\|Aclame:protein:vir:81073\|NCBI_annot:p06\|genbank:acc:YP_001285676;genbank:gi:148727184;genbank:Ge	Blast (e-value=0)
MTP	11	lcl\|Aclame:protein:vir:81065\|NCBI_annot:p14\|genbank:acc:YP_001285684;genbank:gi:148727192;genbank:Ge	Blast (e-value=1e-119)
Sheath	NOT FOUND
Ad1	7	lcl\|Aclame:protein:vir:81069\|NCBI_annot:p10\|genbank:acc:YP_001285680;genbank:gi:148727188;genbank:Ge	HHsearch (proba=100.00%)
Hc1	8	lcl\|Aclame:protein:vir:81068\|NCBI_annot:p11\|genbank:acc:YP_001285681;genbank:gi:148727189;genbank:Ge	HHsearch (proba=100.00%)
Ne1	9	lcl\|Aclame:protein:vir:81067\|NCBI_annot:p12\|genbank:acc:YP_001285682;genbank:gi:156535145;genbank:Ge	HHsearch (proba=100.00%)
Tc1	10	lcl\|Aclame:protein:vir:81066\|NCBI_annot:p13\|genbank:acc:YP_001285683;genbank:gi:148727191;genbank:Ge	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:81070 protein:vir:97053 protein:vir:10364	Xop411 OP1 Xp10	100 % 98 % 98 %
Portal	protein:vir:81072 protein:vir:10362 protein:vir:97060	Xop411 Xp10 OP1	100 % 99 % 98 %
TermL	protein:vir:81073 protein:vir:10361 protein:vir:97071	Xop411 Xp10 OP1	100 % 94 % 84 %
MTP	protein:vir:81065 protein:vir:97081 protein:vir:10369	Xop411 OP1 Xp10	100 % 96 % 95 %
Ad1	protein:vir:81069 protein:vir:10365 protein:vir:97069	Xop411 Xp10 OP1	100 % 96 % 92 %
Hc1	protein:vir:81068 protein:vir:10366 protein:vir:97076	Xop411 Xp10 OP1	100 % 97 % 96 %
Ne1	protein:vir:81067 protein:vir:10367 protein:vir:97088	Xop411 Xp10 OP1	100 % 99 % 89 %
Tc1	protein:vir:81066 protein:vir:10368 protein:vir:97070	Xop411 Xp10 OP1	100 % 97 % 92 %