Query lcl|Aclame:protein:vir:81228|NCBI_annot:gp11|genbank:acc:YP_001456741;genbank:gi:157168384;uniprot:Q9MBJ4;genbank:GeneID:5580351 Match_columns 109 No_of_seqs 2 out of 5 Neff 1.5 Searched_HMMs 1612 Date Tue Dec 3 00:25:05 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_17 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_17_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:81228 Length: 109 100.0 7.5E-82 4.6E-85 465.3 10.4 109 1-109 1-109 (109) 2 protein:vir:98426 Length: 131 90.6 0.0074 4.6E-06 32.3 8.0 97 1-109 29-129 (131) 3 protein:vir:81066 Length: 118 70.3 0.21 0.00013 24.3 8.4 96 1-109 18-116 (118) 4 protein:vir:10368 Length: 118 68.8 0.23 0.00014 24.1 8.2 96 1-109 18-116 (118) 5 protein:vir:97070 Length: 118 57.3 0.44 0.00027 22.6 8.4 96 1-109 18-116 (118) 6 protein:vir:1892 Length: 121 # 54.9 0.49 0.00031 22.3 8.4 95 1-108 25-121 (121) 7 protein:vir:1438 Length: 115 # 48.7 0.66 0.00041 21.6 8.2 95 1-106 17-115 (115) 8 protein:vir:100116 Length: 115 41.2 0.94 0.00058 20.7 8.3 95 1-108 17-115 (115) 9 protein:vir:4348 Length: 121 # 35.4 1.2 0.00076 20.1 8.2 95 1-108 25-121 (121) 10 protein:vir:9579 Length: 111 # 22.3 2.5 0.0015 18.4 8.1 94 1-109 17-111 (111) No 1 >protein:vir:81228 Length: 109 # NCBI annotation: gp11 # Family: family:all:10297 # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456741;genbank:gi:157168384;uniprot:Q9MBJ4;genbank:GeneID:5580351 Probab=100.00 E-value=7.5e-82 Score=465.34 Aligned_cols=109 Identities=100% Similarity=1.532 Sum_probs=109.0 Q ss_pred CeeeecCCCCcccccCeeEeecCCCcccccchhccCceeEeeeeeeeeeecccccchhHHHHHHHHHHHHhhccccceee Q lcl|Aclame:pro 1 MVYVEVPHNAPLDKLPCIDLQPAGPGSNLGAFNALGGDLVDVDVDFYAPVDYFNSGTAYEHASAIRSFLSKIRLPGFNVV 80 (109) Q Consensus 1 ~VY~E~PH~~~~~~LP~i~~Q~~GP~s~~~A~Ns~G~D~VD~DiD~~~~~D~~~sG~A~E~A~~IRs~~~r~R~~~~~V~ 80 (109) |||||||||||||||||||+||+||||||||||||||||||+|||||+|+||||||+||||||+|||||||||||||||| T Consensus 1 ~VY~E~PH~~~~~~LP~i~~Q~~GP~a~~~A~Na~G~D~VD~DiD~~~~~D~~~sG~A~E~A~~IRs~~~r~R~~~~~V~ 80 (109) T protein:vir:81 1 MVYVEVPHNAPLDKLPCIDLQPAGPGSNLGAFNALGGDLVDVDVDFYAPVDYFNSGTAYEHASAIRSFLSKIRLPGFNVV 80 (109) T ss_pred CeeeecCCCCcccccCeeEeecCCCcccccchhccCceeEeeeeeeeeeecccccchhHHHHHHHHHHHHhhccccceee Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ecccccccCCCCcceeeeceeEEEEEecC Q lcl|Aclame:pro 81 AVTYPISLPDRNPRIRRLGMTATVAVKHT 109 (109) Q Consensus 81 ~~~~PIs~PD~N~~IRR~G~T~TVAV~~~ 109 (109) |+||||++||||||||||||||||||||| T Consensus 81 ~~~~P~~~PD~N~~IRR~G~T~TVAV~~~ 109 (109) T protein:vir:81 81 AVTYPISLPDRNPRIRRLGMTATVAVKHT 109 (109) T ss_pred eccCCccCCCCCcceeeeceeEEEEeecC Confidence 99999999999999999999999999999 No 2 >protein:vir:98426 Length: 131 # NCBI annotation: ORF6 # Family: family:all:12105 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958284;genbank:gi:41057258;uniprot:Q38599;genbank:GeneID:2732810 Probab=90.59 E-value=0.0074 Score=32.27 Aligned_cols=97 Identities=21% Similarity=0.229 Sum_probs=72.8 Q ss_pred CeeeecCCCCcccccCeeEeecCCCcccccchhccCceeEeeeeeeeeeecccccchhHHHHHHHHHHHHhhcc--ccce Q lcl|Aclame:pro 1 MVYVEVPHNAPLDKLPCIDLQPAGPGSNLGAFNALGGDLVDVDVDFYAPVDYFNSGTAYEHASAIRSFLSKIRL--PGFN 78 (109) Q Consensus 1 ~VY~E~PH~~~~~~LP~i~~Q~~GP~s~~~A~Ns~G~D~VD~DiD~~~~~D~~~sG~A~E~A~~IRs~~~r~R~--~~~~ 78 (109) -|+.|+|-+-|. ..+-+--+|+.+. .-+-|..-|+|--|.|-+ -+|.++|+.+|.-|...+- +-.+ T Consensus 29 ~V~t~vP~~RP~---rfV~VertgG~~~-----~~~~Dr~~L~Vq~W~~t~----~~A~~La~~vr~~ll~~~~~~g~~~ 96 (131) T protein:vir:98 29 PVGSRVPSPRPA---RFVRIERIGGPAN-----TVVTDRPRLDVHCWGSSE----EDAHDLMQLCRALLGAARGSHGDTV 96 (131) T ss_pred EecccCCCCCCc---eEEEEEecCCCcC-----CccccceEEEEEecCCCH----HHHHHHHHHHHHHHhhcccccchhe Confidence 789999999873 3455554544321 226688888887776633 4899999999998886643 2233 Q ss_pred --eeecccccccCCCCcceeeeceeEEEEEecC Q lcl|Aclame:pro 79 --VVAVTYPISLPDRNPRIRRLGMTATVAVKHT 109 (109) Q Consensus 79 --V~~~~~PIs~PD~N~~IRR~G~T~TVAV~~~ 109 (109) ...+.-|--.||..+.+.|--+|.++.+|-. T Consensus 97 ~~~~e~~gpy~~PD~es~~~Ryq~tv~l~~r~~ 129 (131) T protein:vir:98 97 LARPATGGPQFLPDAETGAARWAFTLDITMRGH 129 (131) T ss_pred eccccCCCCCcCCCCCCCCceeEEEEEEEeeec Confidence 5667789999999999999999999999988 No 3 >protein:vir:81066 Length: 118 # NCBI annotation: p13 # Family: family:all:3244 # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285683;genbank:gi:148727191;genbank:GeneID:5247111 Probab=70.33 E-value=0.21 Score=24.29 Aligned_cols=96 Identities=18% Similarity=0.192 Sum_probs=54.8 Q ss_pred CeeeecCCCCccc-c-cCeeEeecCCCcccccchhccC-ceeEeeeeeeeeeecccccchhHHHHHHHHHHHHhhccccc Q lcl|Aclame:pro 1 MVYVEVPHNAPLD-K-LPCIDLQPAGPGSNLGAFNALG-GDLVDVDVDFYAPVDYFNSGTAYEHASAIRSFLSKIRLPGF 77 (109) Q Consensus 1 ~VY~E~PH~~~~~-~-LP~i~~Q~~GP~s~~~A~Ns~G-~D~VD~DiD~~~~~D~~~sG~A~E~A~~IRs~~~r~R~~~~ 77 (109) -||- .-+|++ . .|.+-.|.+|=....--=+..+ -|.+.+-||.|+. .-..|.+++.+||.-|+.- +.+ T Consensus 18 Rvyp---~~aP~~~~~~Pyiv~q~vsg~p~~~l~G~~~~~~~~rvQIdvyA~----t~~~A~~l~~av~~al~~~--~~~ 88 (118) T protein:vir:81 18 RVYA---DIPPDSPPLDAYAIYQRVGGVPVYWQEGGMPEKVNARVQIQIWSR----SKQEAYLATVQVLRLVSEA--PDM 88 (118) T ss_pred cccc---ccCCCCCccCceEEEEecCCcccccccCCCCCccceeEEEEEeeC----CHHHHHHHHHHHHHHhhhc--cce Confidence 4553 344443 3 4999999987432211112222 3457788888875 3467999999999999653 233 Q ss_pred eeeecccccccCCCCcceeeeceeEEEEEecC Q lcl|Aclame:pro 78 NVVAVTYPISLPDRNPRIRRLGMTATVAVKHT 109 (109) Q Consensus 78 ~V~~~~~PIs~PD~N~~IRR~G~T~TVAV~~~ 109 (109) .. .+.|+. ++.+-.+-.+.+..+-|=|. T Consensus 89 ~~--~~~~~d--~ye~dt~l~r~~~Df~iw~~ 116 (118) T protein:vir:81 89 QV--LSQPID--DYVREIKLYGSRVDVSMWYP 116 (118) T ss_pred ee--ccCCcc--ccccccCceeEEEEEEEEec Confidence 32 344544 33344444555555555555 No 4 >protein:vir:10368 Length: 118 # NCBI annotation: conserved phage protein # Family: family:all:3244 # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858960;genbank:gi:32128425;genbank:GeneID:2648389 Probab=68.82 E-value=0.23 Score=24.07 Aligned_cols=96 Identities=16% Similarity=0.149 Sum_probs=57.5 Q ss_pred CeeeecCCCCccc-c-cCeeEeecCCCcccccchhc-cCceeEeeeeeeeeeecccccchhHHHHHHHHHHHHhhccccc Q lcl|Aclame:pro 1 MVYVEVPHNAPLD-K-LPCIDLQPAGPGSNLGAFNA-LGGDLVDVDVDFYAPVDYFNSGTAYEHASAIRSFLSKIRLPGF 77 (109) Q Consensus 1 ~VY~E~PH~~~~~-~-LP~i~~Q~~GP~s~~~A~Ns-~G~D~VD~DiD~~~~~D~~~sG~A~E~A~~IRs~~~r~R~~~~ 77 (109) -|| |.-+|++ . .|.+-.|.+|=....--=+. -+.+.+.+-||.|+. .-..|.+++.+||.-|+.- ..+ T Consensus 18 RVy---p~~aP~~~~~~Pyiv~q~vsg~p~~~l~G~~~~~~~~rvQIdvyA~----t~~~A~~l~~av~~al~~~--~~~ 88 (118) T protein:vir:10 18 RVY---ADIPPDSPPLDAYAIYQRVGGVPVYWQEGGMPEKVNARVQIQIWSR----SKQEAYLATVQVLRLVSEA--NDM 88 (118) T ss_pred ccc---cccCCCCCCcCCEEEEEecCCcccccccCCCCccceeEEEEEEeeC----CHHHHHHHHHHHHHHhhhc--ccc Confidence 455 3344443 2 49999999874322111122 235567888888875 3467999999999999763 233 Q ss_pred eeeecccccccCCCCcceeeeceeEEEEEecC Q lcl|Aclame:pro 78 NVVAVTYPISLPDRNPRIRRLGMTATVAVKHT 109 (109) Q Consensus 78 ~V~~~~~PIs~PD~N~~IRR~G~T~TVAV~~~ 109 (109) .. .+.|+. ++.+-.+-.+.+..+-|=|+ T Consensus 89 ~~--~~~~~d--~ye~dt~l~r~~~Df~vw~~ 116 (118) T protein:vir:10 89 QV--LSQPID--DYVREIKLYGSRVDISMWYN 116 (118) T ss_pred ee--ccCCCc--cccccCCceEEEEEEEEeee Confidence 33 334544 34444555566666666666 No 5 >protein:vir:97070 Length: 118 # NCBI annotation: hypothetical protein # Family: family:all:3244 # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453569;genbank:gi:84662604;genbank:GeneID:5142485 Probab=57.31 E-value=0.44 Score=22.55 Aligned_cols=96 Identities=15% Similarity=0.115 Sum_probs=56.3 Q ss_pred CeeeecCCCCccc-c-cCeeEeecCCCcccccchhc-cCceeEeeeeeeeeeecccccchhHHHHHHHHHHHHhhccccc Q lcl|Aclame:pro 1 MVYVEVPHNAPLD-K-LPCIDLQPAGPGSNLGAFNA-LGGDLVDVDVDFYAPVDYFNSGTAYEHASAIRSFLSKIRLPGF 77 (109) Q Consensus 1 ~VY~E~PH~~~~~-~-LP~i~~Q~~GP~s~~~A~Ns-~G~D~VD~DiD~~~~~D~~~sG~A~E~A~~IRs~~~r~R~~~~ 77 (109) -|| |.-+|++ . .|.+-.|.+|=....--=|. -..+.+.+-||.|+. .-..|.+++.+||.-|+.. +++ T Consensus 18 Rvy---p~~aP~~~~~~Pyiv~q~vsg~p~~~ldG~~~~~~~~rvQIdvyA~----t~~~A~~l~~av~~al~~~--~~~ 88 (118) T protein:vir:97 18 RVY---ADIPPDSPPLDAYAIYQRVGGVPVYWKEGGMPDKVNARVQVQIWSR----SKQEAYLATVQVLRIVSEA--NDM 88 (118) T ss_pred ccc---cccCCCCCCcCCEEEEEecCCcccccccCCCCCccceeEEEEEeeC----CHHHHHHHHHHHHHHhhcc--ccc Confidence 455 3444443 3 59999999984322211132 224557888888875 3467899999999988653 334 Q ss_pred eeeecccccccCCCCcceeeeceeEEEEEecC Q lcl|Aclame:pro 78 NVVAVTYPISLPDRNPRIRRLGMTATVAVKHT 109 (109) Q Consensus 78 ~V~~~~~PIs~PD~N~~IRR~G~T~TVAV~~~ 109 (109) .. .+.|++. +.+--|-.|.+...-|=|. T Consensus 89 ~~--~~~~~~~--ye~dt~lyr~~~Df~iw~~ 116 (118) T protein:vir:97 89 QV--LSQPIDD--YVRELKLYGSRVDISMWYN 116 (118) T ss_pred cc--ccCCccc--ccccCCceEEEEEEEEEee Confidence 33 3445543 3344455555555555555 No 6 >protein:vir:1892 Length: 121 # NCBI annotation: gp11 # Family: family:all:896 # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037672;genbank:gi:9634130;genbank:GeneID:1262490 Probab=54.89 E-value=0.49 Score=22.27 Aligned_cols=95 Identities=16% Similarity=0.148 Sum_probs=62.1 Q ss_pred Cee--eecCCCCcccccCeeEeecCCCcccccchhccCceeEeeeeeeeeeecccccchhHHHHHHHHHHHHhhccccce Q lcl|Aclame:pro 1 MVY--VEVPHNAPLDKLPCIDLQPAGPGSNLGAFNALGGDLVDVDVDFYAPVDYFNSGTAYEHASAIRSFLSKIRLPGFN 78 (109) Q Consensus 1 ~VY--~E~PH~~~~~~LP~i~~Q~~GP~s~~~A~Ns~G~D~VD~DiD~~~~~D~~~sG~A~E~A~~IRs~~~r~R~~~~~ 78 (109) -|| -+-|++.+ +|.+-.|.+|=....-.=+.-|.|.+-+.||.|+.- -..|.+++.+||.-|.. -++ T Consensus 25 Rvyp~~~aP~~~~---~Pyiv~q~vsg~p~~~l~G~~~~~~~~vQIDvyA~t----~~~A~~l~~avr~Ale~---~~~- 93 (121) T protein:vir:18 25 RIYPFGIQDDNVV---YPYVVWQNITGSPENYIAQRPDADFFTLQVDAYADT----VDEVIAVATALRDAIEP---HAH- 93 (121) T ss_pred eeeeccCCCCcCc---CCeEEEEEecCcccceecCCCCcceeEEEEEeecCC----HHHHHHHHHHHHHHhhh---cCc- Confidence 477 36788766 599999999843333333567888899988888752 35688999999998864 222 Q ss_pred eeecccccccCCCCcceeeeceeEEEEEec Q lcl|Aclame:pro 79 VVAVTYPISLPDRNPRIRRLGMTATVAVKH 108 (109) Q Consensus 79 V~~~~~PIs~PD~N~~IRR~G~T~TVAV~~ 108 (109) + +..++..=|-..++-|-++.+.--+-- T Consensus 94 ~--~~~~~~~ye~dT~lyR~s~Dv~~~~~r 121 (121) T protein:vir:18 94 I--TRWGGQERDPETKRYRYSFDVDWIVTR 121 (121) T ss_pred c--cCCCCCCCcccccceeeeeEEEEeecC Confidence 2 223333223334566777776666655 No 7 >protein:vir:1438 Length: 115 # NCBI annotation: hypothetical protein # Family: family:all:2712 # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536367;genbank:gi:17975172;genbank:GeneID:929144 Probab=48.71 E-value=0.66 Score=21.57 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=55.6 Q ss_pred Ceeee-cCCCCcccccCeeEeecCCCcccccchh-ccCceeEeeeeeeeeeecccccchhHHHHHHHHHHHHhhccccce Q lcl|Aclame:pro 1 MVYVE-VPHNAPLDKLPCIDLQPAGPGSNLGAFN-ALGGDLVDVDVDFYAPVDYFNSGTAYEHASAIRSFLSKIRLPGFN 78 (109) Q Consensus 1 ~VY~E-~PH~~~~~~LP~i~~Q~~GP~s~~~A~N-s~G~D~VD~DiD~~~~~D~~~sG~A~E~A~~IRs~~~r~R~~~~~ 78 (109) -||-. .|.+. .+|.+-.|.+|=... ..++ .-|.|.+.+-||.|+. .-..|.+++.+|+.-+...+ +.+. T Consensus 17 RVyp~~aP~~~---~~Pyiv~q~vsg~p~-~~L~G~~~~~~~~vQIDvyA~----t~~~A~~l~~~v~~~~~~~~-~~~~ 87 (115) T protein:vir:14 17 KGYLGVAPAKA---PAPYFVVTRVHGALD-MALAGLTGGRSGSYQIDCYAP----TFTDADRLADLAVDRAMSVQ-DRFS 87 (115) T ss_pred ccccccCCCCC---CCCEEEEEeecCccc-ccccCCCCCcceEEEEEEeeC----CHHHHHHHHHHHHHHHhcCc-ccee Confidence 55533 34443 359999998774322 1233 2566888999998876 35678899999998877764 3334 Q ss_pred eeecccccccCCCCcc--eeeeceeEEEEE Q lcl|Aclame:pro 79 VVAVTYPISLPDRNPR--IRRLGMTATVAV 106 (109) Q Consensus 79 V~~~~~PIs~PD~N~~--IRR~G~T~TVAV 106 (109) +.....+.. ++.+- +.|..+.+.|=- T Consensus 88 ~~~~~~~~d--~ye~dt~lyR~s~D~~vWf 115 (115) T protein:vir:14 88 VGGVDELPD--DYSEDTGLFRISLELSVEF 115 (115) T ss_pred eeeecCCCC--CCcccccceeeEEEEEEeC Confidence 333222221 24444 455555554444 No 8 >protein:vir:100116 Length: 115 # NCBI annotation: gp10 # Family: family:all:2712 # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945040;genbank:gi:38707900;genbank:GeneID:2744163 Probab=41.23 E-value=0.94 Score=20.74 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=54.7 Q ss_pred Ceee-ecCCCCcccccCeeEeecCCCcccccchh-ccCceeEeeeeeeeeeecccccchhHHHHHHHHHHHHhhccccce Q lcl|Aclame:pro 1 MVYV-EVPHNAPLDKLPCIDLQPAGPGSNLGAFN-ALGGDLVDVDVDFYAPVDYFNSGTAYEHASAIRSFLSKIRLPGFN 78 (109) Q Consensus 1 ~VY~-E~PH~~~~~~LP~i~~Q~~GP~s~~~A~N-s~G~D~VD~DiD~~~~~D~~~sG~A~E~A~~IRs~~~r~R~~~~~ 78 (109) -||- ..|... .+|.+-.|.+|=... ..++ .-|.|.+.+-||.|+. .-+.|.+++.+|+.-+.... +.+. T Consensus 17 RVyp~~aP~~~---~~Pyiv~q~vsg~p~-~~L~G~~~~~~~~vQIDvyA~----t~~~A~~l~~~v~~~~~~~~-~~~~ 87 (115) T protein:vir:10 17 KGYLGVAPEKA---PAPYFVVTRVHGALD-MALAGLTGGRSGSYQIDCYAP----TFTDADRLADLAVDRAMSVQ-DRFS 87 (115) T ss_pred eeecccCCCCC---CCCEEEEEeecCccc-cccCCCCCCcceEEEEEEeeC----CHHHHHHHHHHHHHHHhcCc-ccee Confidence 4552 234433 359999998874322 2333 2566889999998876 35678899999987666653 3334 Q ss_pred eeecccccccCCCCcc--eeeeceeEEEEEec Q lcl|Aclame:pro 79 VVAVTYPISLPDRNPR--IRRLGMTATVAVKH 108 (109) Q Consensus 79 V~~~~~PIs~PD~N~~--IRR~G~T~TVAV~~ 108 (109) +.....+.. ++.+- +.|..+.+.|= + T Consensus 88 ~~~~~~~~d--~ye~dt~lyR~s~D~~vW--f 115 (115) T protein:vir:10 88 VGGVDELPD--DYSEDTGLFRISLELSVE--F 115 (115) T ss_pred EeeecCCCC--CCcccccceeeEEEEEEe--C Confidence 433322221 24444 44555554444 4 No 9 >protein:vir:4348 Length: 121 # NCBI annotation: Orf15 # Family: family:all:896 # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061511;genbank:gi:9635607;genbank:GeneID:1262874 Probab=35.41 E-value=1.2 Score=20.09 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=58.8 Q ss_pred Cee--eecCCCCcccccCeeEeecCCCcccccchhccCceeEeeeeeeeeeecccccchhHHHHHHHHHHHHhhccccce Q lcl|Aclame:pro 1 MVY--VEVPHNAPLDKLPCIDLQPAGPGSNLGAFNALGGDLVDVDVDFYAPVDYFNSGTAYEHASAIRSFLSKIRLPGFN 78 (109) Q Consensus 1 ~VY--~E~PH~~~~~~LP~i~~Q~~GP~s~~~A~Ns~G~D~VD~DiD~~~~~D~~~sG~A~E~A~~IRs~~~r~R~~~~~ 78 (109) -|| -.-|++.+ +|.+-.|.+|=....-.=|.-|.|.+.+.||.|+. .-..|.+++.+||.-|.. .++ . T Consensus 25 Rvyp~~~aP~~~~---~Pyiv~q~vsg~p~~~l~g~~~~~~~~vQIDvyA~----t~~~A~~l~~av~~Al~~--~~~-~ 94 (121) T protein:vir:43 25 RMYQFGLAPQLVV---KPYATWQTISGSPENYLWGRPDADGFTIQVDIFSA----TAAEARDAAKAIRDAIEL--SAY-V 94 (121) T ss_pred eeeccCCCCCCCc---CCeEEEEEecCcccceecCCCCcceeEEEEEeeeC----CHHHHHHHHHHHHHHhhh--cCC-c Confidence 476 35577765 79999999984443334455677888888888864 336789999999998863 222 1 Q ss_pred eeecccccccCCCCcceeeeceeEEEEEec Q lcl|Aclame:pro 79 VVAVTYPISLPDRNPRIRRLGMTATVAVKH 108 (109) Q Consensus 79 V~~~~~PIs~PD~N~~IRR~G~T~TVAV~~ 108 (109) + ...+..=|-..++-|-++.+.--+-- T Consensus 95 ~---~~~~~~ye~dT~lyR~s~Dv~w~~~r 121 (121) T protein:vir:43 95 V---RWGGESVDPDTKTYRVSFDVDWIVQR 121 (121) T ss_pred c---cCCCCCCcccccceeeeeEEEEeecC Confidence 1 11122112223455666666655444 No 10 >protein:vir:9579 Length: 111 # NCBI annotation: gp45 # Family: family:all:1269 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862884;genbank:gi:32469476;genbank:GeneID:1461321 Probab=22.28 E-value=2.5 Score=18.43 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=69.1 Q ss_pred CeeeecCCCCcccccCeeEeecCCCcccccchhccCceeEeeeeeeeeeecccccchhHHHHHHHHHHHHhhcc-cccee Q lcl|Aclame:pro 1 MVYVEVPHNAPLDKLPCIDLQPAGPGSNLGAFNALGGDLVDVDVDFYAPVDYFNSGTAYEHASAIRSFLSKIRL-PGFNV 79 (109) Q Consensus 1 ~VY~E~PH~~~~~~LP~i~~Q~~GP~s~~~A~Ns~G~D~VD~DiD~~~~~D~~~sG~A~E~A~~IRs~~~r~R~-~~~~V 79 (109) -|+.|+|-+.|. +.+-++-.|=..+ ..+|.--++|--|.|-+ ..|.|+|+.+|.-|.++++ +.+.. T Consensus 17 pv~~~vp~~~P~---~FV~vErtGG~~~------~~~~~p~laVq~wg~S~----~~Aa~La~~v~~a~~~l~~~~~i~~ 83 (111) T protein:vir:95 17 PSFFEHEAEAPD---SFVIIQKTGGKER------NHSGSATFAFQSYAPTM----QKAAELNVKVKSAVKGLIELDSICG 83 (111) T ss_pred eEEeecCCCCCC---ceEEEEeeCCccc------cccccceEEEEeccccH----HHHHHHHHHHHHHHhhhhccccccc Confidence 799999999984 7788888874332 23477788888888765 4799999999999998863 56666 Q ss_pred eecccccccCCCCcceeeeceeEEEEEecC Q lcl|Aclame:pro 80 VAVTYPISLPDRNPRIRRLGMTATVAVKHT 109 (109) Q Consensus 80 ~~~~~PIs~PD~N~~IRR~G~T~TVAV~~~ 109 (109) +..+.|...||--+.-=| .-+++-+++- T Consensus 84 v~~~s~ynf~d~~tk~~R--YQ~~~~i~~~ 111 (111) T protein:vir:95 84 VHLNSDYNFTDTETKQYR--YQAVFDINYF 111 (111) T ss_pred cccCCccccCCCCCCCce--EEEEEEEEeC Confidence 788888888876643333 3455666666 Done!