Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 2 lcl|NC_021558.1_cdsid_YP_008129868.1 HHsearch (proba=100.00%)
Portal 1 lcl|NC_021558.1_cdsid_YP_008129867.1 HHsearch (proba=100.00%)
TermL NOT FOUND
MTP 9 lcl|NC_021558.1_cdsid_YP_008129875.1 Blast (e-value=4e-07)
Sheath NOT FOUND
Ad1 5 lcl|NC_021558.1_cdsid_YP_008129871.1 HHsearch (proba=98.42%)
Hc1 6 lcl|NC_021558.1_cdsid_YP_008129872.1 HHsearch (proba=100.00%)
Ne1 7 lcl|NC_021558.1_cdsid_YP_008129873.1 HHsearch (proba=100.00%)
Tc1 8 lcl|NC_021558.1_cdsid_YP_008129874.1 HHsearch (proba=99.55%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:79548cdtI30 %
Portal protein:vir:1266
protein:vir:81095
protein:vir:79984
phi-105
tp310-1
tp310-3
20 %
19 %
19 %
MTP protein:vir:100083
protein:vir:1439
protein:vir:100241
phi1026b
phiE125
Bcep176
27 %
27 %
25 %
Ad1 protein:vir:1384
protein:vir:102158
protein:vir:81159
phi3626
phiSM101
Geobacillus virus E2
25 %
18 %
19 %
Hc1 protein:vir:80114
protein:vir:95373
protein:vir:965
bacteriophage bv1
GBSV1
bIL285
37 %
37 %
23 %
Ne1 protein:vir:80362
protein:vir:100075
protein:vir:100243
phi644-2
phi1026b
Bcep176
22 %
22 %
22 %
Tc1 protein:vir:1438
protein:vir:100116
protein:vir:81066
phiE125
phi1026b
Xop411
26 %
26 %
18 %