Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PG1 | Genbank acc : NC_021558

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 6) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 67

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	2	lcl\|NC_021558.1_cdsid_YP_008129868.1	HHsearch (proba=100.00%)
Portal	1	lcl\|NC_021558.1_cdsid_YP_008129867.1	HHsearch (proba=100.00%)
TermL	NOT FOUND
MTP	9	lcl\|NC_021558.1_cdsid_YP_008129875.1	Blast (e-value=4e-07)
Sheath	NOT FOUND
Ad1	5	lcl\|NC_021558.1_cdsid_YP_008129871.1	HHsearch (proba=98.42%)
Hc1	6	lcl\|NC_021558.1_cdsid_YP_008129872.1	HHsearch (proba=100.00%)
Ne1	7	lcl\|NC_021558.1_cdsid_YP_008129873.1	HHsearch (proba=100.00%)
Tc1	8	lcl\|NC_021558.1_cdsid_YP_008129874.1	HHsearch (proba=99.55%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79548	cdtI	30 %
Portal	protein:vir:1266 protein:vir:81095 protein:vir:79984	phi-105 tp310-1 tp310-3	20 % 19 % 19 %
MTP	protein:vir:100083 protein:vir:1439 protein:vir:100241	phi1026b phiE125 Bcep176	27 % 27 % 25 %
Ad1	protein:vir:1384 protein:vir:102158 protein:vir:81159	phi3626 phiSM101 Geobacillus virus E2	25 % 18 % 19 %
Hc1	protein:vir:80114 protein:vir:95373 protein:vir:965	bacteriophage bv1 GBSV1 bIL285	37 % 37 % 23 %
Ne1	protein:vir:80362 protein:vir:100075 protein:vir:100243	phi644-2 phi1026b Bcep176	22 % 22 % 22 %
Tc1	protein:vir:1438 protein:vir:100116 protein:vir:81066	phiE125 phi1026b Xop411	26 % 26 % 18 %