Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : bIL285 | Genbank acc : NC_002666 | Aclame index mge :19

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 62

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	44	lcl\|Aclame:protein:vir:962\|NCBI_annot:capsid	HHsearch (proba=100.00%)
Portal	42	lcl\|Aclame:protein:vir:960\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	41	lcl\|Aclame:protein:vir:959\|NCBI_annot:terminase\|genbank:acc:NP_076613;genbank:gi:13095721;genbank:Ge	Blast (e-value=0)
MTP	50	lcl\|Aclame:protein:vir:968\|NCBI_annot:Orf50\|genbank:acc:NP_076622;genbank:gi:13095730;genbank:GeneID	Blast (e-value=1e-119)
Sheath	NOT FOUND
Ad1	46	lcl\|Aclame:protein:vir:964\|NCBI_annot:Orf46\|genbank:acc:NP_076618;genbank:gi:13095726;genbank:GeneID	HHsearch (proba=100.00%)
Hc1	47	lcl\|Aclame:protein:vir:965\|NCBI_annot:Orf47\|genbank:acc:NP_076619;genbank:gi:13095727;genbank:GeneID	HHsearch (proba=100.00%)
Ne1	48	lcl\|Aclame:protein:vir:966\|NCBI_annot:Orf48\|genbank:acc:NP_076620;genbank:gi:13095728;genbank:GeneID	HHsearch (proba=100.00%)
Tc1	49	lcl\|Aclame:protein:vir:967\|NCBI_annot:Orf49\|genbank:acc:NP_076621;genbank:gi:13095729;genbank:GeneID	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:962 protein:vir:9704 protein:vir:100172	bIL285 315.2 phi AT3	100 % 34 % 33 %
Portal	protein:vir:960 protein:vir:80134 protein:vir:95378	bIL285 bacteriophage bv1 GBSV1	100 % 47 % 46 %
TermL	protein:vir:959 protein:vir:95379 protein:vir:80117	bIL285 GBSV1 bacteriophage bv1	100 % 50 % 49 %
MTP	protein:vir:968 protein:vir:95370 protein:vir:80149	bIL285 GBSV1 bacteriophage bv1	100 % 45 % 45 %
Ad1	protein:vir:964 protein:vir:95374 protein:vir:80144	bIL285 GBSV1 bacteriophage bv1	100 % 43 % 43 %
Hc1	protein:vir:965 protein:vir:80114 protein:vir:95373	bIL285 bacteriophage bv1 GBSV1	100 % 34 % 33 %
Ne1	protein:vir:966 protein:vir:95372 protein:vir:80116	bIL285 GBSV1 bacteriophage bv1	100 % 42 % 38 %
Tc1	protein:vir:967 protein:vir:95371 protein:vir:80109	bIL285 GBSV1 bacteriophage bv1	100 % 39 % 37 %