Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 44 lcl|Aclame:protein:vir:962|NCBI_annot:capsid HHsearch (proba=100.00%)
Portal 42 lcl|Aclame:protein:vir:960|NCBI_annot:portal HHsearch (proba=100.00%)
TermL 41 lcl|Aclame:protein:vir:959|NCBI_annot:terminase|genbank:acc:NP_076613;genbank:gi:13095721;genbank:Ge Blast (e-value=0)
MTP 50 lcl|Aclame:protein:vir:968|NCBI_annot:Orf50|genbank:acc:NP_076622;genbank:gi:13095730;genbank:GeneID Blast (e-value=1e-119)
Sheath NOT FOUND
Ad1 46 lcl|Aclame:protein:vir:964|NCBI_annot:Orf46|genbank:acc:NP_076618;genbank:gi:13095726;genbank:GeneID HHsearch (proba=100.00%)
Hc1 47 lcl|Aclame:protein:vir:965|NCBI_annot:Orf47|genbank:acc:NP_076619;genbank:gi:13095727;genbank:GeneID HHsearch (proba=100.00%)
Ne1 48 lcl|Aclame:protein:vir:966|NCBI_annot:Orf48|genbank:acc:NP_076620;genbank:gi:13095728;genbank:GeneID HHsearch (proba=100.00%)
Tc1 49 lcl|Aclame:protein:vir:967|NCBI_annot:Orf49|genbank:acc:NP_076621;genbank:gi:13095729;genbank:GeneID HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:962
protein:vir:9704
protein:vir:100172
bIL285
315.2
phi AT3
100 %
34 %
33 %
Portal protein:vir:960
protein:vir:80134
protein:vir:95378
bIL285
bacteriophage bv1
GBSV1
100 %
47 %
46 %
TermL protein:vir:959
protein:vir:95379
protein:vir:80117
bIL285
GBSV1
bacteriophage bv1
100 %
50 %
49 %
MTP protein:vir:968
protein:vir:95370
protein:vir:80149
bIL285
GBSV1
bacteriophage bv1
100 %
45 %
45 %
Ad1 protein:vir:964
protein:vir:95374
protein:vir:80144
bIL285
GBSV1
bacteriophage bv1
100 %
43 %
43 %
Hc1 protein:vir:965
protein:vir:80114
protein:vir:95373
bIL285
bacteriophage bv1
GBSV1
100 %
34 %
33 %
Ne1 protein:vir:966
protein:vir:95372
protein:vir:80116
bIL285
GBSV1
bacteriophage bv1
100 %
42 %
38 %
Tc1 protein:vir:967
protein:vir:95371
protein:vir:80109
bIL285
GBSV1
bacteriophage bv1
100 %
39 %
37 %