BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_021558.1_cdsid_YP_008129875.1 [gene=PANG_00009] [protein=hypothetical protein] [protein_id=YP_008129875.1] [location=4240..4653] (137 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|15919|lcl|protein:vir:3429 Length: 246 # NCBI annotation: tai... 45 4e-07 gi|12298|lcl|protein:vir:79536 Length: 247 # NCBI annotation: pu... 44 6e-07 gi|17283|lcl|protein:vir:398 Length: 245 # NCBI annotation: gp13... 42 4e-06 gi|13914|lcl|protein:vir:9881 Length: 168 # NCBI annotation: hyp... 31 0.005 gi|6775|lcl|protein:vir:96067 Length: 460 # NCBI annotation: con... 21 6.5 >gi|15919|lcl|protein:vir:3429 Length: 246 # NCBI annotation: tail component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040592;genbank:gi:9626256;genbank:GeneID: 2703487 Length = 246 Score = 44.7 bits (104), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 30 ELSADTIDTTSLDSDGGYRTFIG-GFKDGGEVSISGFFNPGDAGQAAVYAAFNSGATTAC 88 EL+A++ D + LD + T G G K G+ S + + PG+ GQ A+ A FN G T A Sbjct: 49 ELTAESYDDSYLDDEDADWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAY 108 Query: 89 EIQFP 93 +I+FP Sbjct: 109 KIRFP 113 >gi|12298|lcl|protein:vir:79536 Length: 247 # NCBI annotation: putative major tail subunit # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272523;genbank:gi:148609392;genbank:Ge neID:5204372 Length = 247 Score = 44.3 bits (103), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Query: 30 ELSADTIDTTSLDS-DGGYRTFIGGFKDGGEVSISGFFNPGDAGQAAVYAAFNSGATTAC 88 E++AD D T LD D ++T G K G+ S + + PGD+GQ + F+SG A Sbjct: 49 EMTADAEDDTYLDDEDADWKTTTQGQKSVGDTSATLAWRPGDSGQKKLVQLFDSGEVCAF 108 Query: 89 EIQFP 93 I++P Sbjct: 109 RIKYP 113 >gi|17283|lcl|protein:vir:398 Length: 245 # NCBI annotation: gp13 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046908;genbank:gi:9630478;genbank:GeneID: 1261652 Length = 245 Score = 41.6 bits (96), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/115 (23%), Positives = 59/115 (51%), Gaps = 3/115 (2%) Query: 20 VAELTSIGGLELSADTIDTTSLDSDGG-YRTFIGGFKDGGEVSISGFFNPGDAGQAAVYA 78 +A++ + EL+A++ D T +D + + + + G K GE +++ + PGD+GQ + Sbjct: 39 LAKIKDLQPGELTAESEDDTYIDDENADWTSTMQGQKSAGETNLTLAWMPGDSGQQDLVN 98 Query: 79 AFNSGATTACEIQFPPALKANWSFDAVVTAFSTGAELEEAISFEATLKVSGEPTL 133 F+ G +I++P + F V++ +E ++ A + +G+P+L Sbjct: 99 WFDEGTVKGYKIKYPNGVVD--VFKGWVSSLGKTISSKEVMTRTAKITNNGKPSL 151 >gi|13914|lcl|protein:vir:9881 Length: 168 # NCBI annotation: hypothetical protein # Family: family:all:629 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795643;genbank:gi:28876398;genbank:GeneID :1257929 Length = 168 Score = 31.2 bits (69), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 6/114 (5%) Query: 21 AELTSIGG-----LELSADTIDTTSLDSDGGYRTFIGGFKDGGEVSISGFFNPGDAGQAA 75 A L +I G + +AD+I+ +S D+ GG+++ I G K+ + G + P D Sbjct: 35 ANLLAISGQQGLTINRTADSIEVSSKDTKGGWKSKIPGMKEWS-IDNDGLYVPSDETHKQ 93 Query: 76 VYAAFNSGATTACEIQFPPALKANWSFDAVVTAFSTGAELEEAISFEATLKVSG 129 + AF ++ K + A V+ +S A ++ +++ +L+ +G Sbjct: 94 LGEAFEKSEFVCIKVINGKTKKGMFGGLASVSDYSLEAPYDDGMTYSISLEGNG 147 >gi|6775|lcl|protein:vir:96067 Length: 460 # NCBI annotation: conserved hypothetical protein ORF004 # Family: family:all:54 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294421;genbank:gi:149408318;genbank:G eneID:5237186 Length = 460 Score = 20.8 bits (42), Expect = 6.5, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 11/23 (47%) Query: 70 DAGQAAVYAAFNSGATTACEIQF 92 DAG AVY A N C QF Sbjct: 32 DAGGIAVYLAANYRLKFLCARQF 54 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.315 0.132 0.378 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,231 Number of Sequences: 514 Number of extensions: 2571 Number of successful extensions: 10 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 10 length of query: 137 length of database: 206,069 effective HSP length: 63 effective length of query: 74 effective length of database: 173,687 effective search space: 12852838 effective search space used: 12852838 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 33 (17.3 bits)