Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 12B8 | Genbank acc : NC_021073

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 3) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 154

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	135	lcl\|NC_021073.1_cdsid_YP_007878108.1	HHsearch (proba=100.00%)
Portal	137	lcl\|NC_021073.1_cdsid_YP_007878110.1	HHsearch (proba=100.00%)
TermL	138	lcl\|NC_021073.1_cdsid_YP_007878111.1	Blast (e-value=1e-66)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	133	lcl\|NC_021073.1_cdsid_YP_007878106.1	HHsearch (proba=100.00%)
Hc1	132	lcl\|NC_021073.1_cdsid_YP_007878105.1	HHsearch (proba=100.00%)
Ne1	129	lcl\|NC_021073.1_cdsid_YP_007878102.1	HHsearch (proba=100.00%)
Tc1	131	lcl\|NC_021073.1_cdsid_YP_007878104.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Hc1	3	2
Ne1<->Ad1	4	3

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:485 protein:vir:100247 protein:vir:4456	P27 Bcep176 ST64B	22 % 21 % 21 %
Portal	protein:vir:4454 protein:vir:483 protein:vir:100150	ST64B P27 phi1026b	31 % 30 % 28 %
TermL	protein:vir:81178 protein:vir:4508 protein:vir:102079	Geobacillus virus E2 V Fah	28 % 27 % 27 %
Ad1	protein:vir:100245 protein:vir:97069 protein:vir:10365	Bcep176 OP1 Xp10	35 % 23 % 23 %
Hc1	protein:vir:80342 protein:vir:1436 protein:vir:81177	phi644-2 phiE125 Geobacillus virus E2	25 % 25 % 24 %
Ne1	protein:vir:105089 protein:vir:5745 protein:vir:4347	phiKO2 PY54 D3	26 % 25 % 23 %
Tc1	protein:vir:5744 protein:vir:105055 protein:vir:93602	PY54 phiKO2 phi 4795	19 % 17 % 19 %