Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : MED4-117 | Genbank acc : NC_020857

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 5) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 63

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	10	lcl\|NC_020857.1_cdsid_YP_007675339.1	HHsearch (proba=100.00%)
Portal	19	lcl\|NC_020857.1_cdsid_YP_007675348.1	HHsearch (proba=100.00%)
TermL	20	lcl\|NC_020857.1_cdsid_YP_007675349.1	Blast (e-value=7e-52)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	8	lcl\|NC_020857.1_cdsid_YP_007675337.1	HHsearch (proba=100.00%)
Hc1	6	lcl\|NC_020857.1_cdsid_YP_007675335.1	HHsearch (proba=100.00%)
Ne1	5	lcl\|NC_020857.1_cdsid_YP_007675334.1	HHsearch (proba=98.43%)
Tc1	4	lcl\|NC_020857.1_cdsid_YP_007675333.1	HHsearch (proba=99.95%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:5974 protein:vir:102944 protein:vir:1583	SPP1 EJ-1 phig1e	34 % 31 % 25 %
Portal	protein:vir:97265 protein:vir:95149 protein:vir:95014	M6 PA73 KS7	30 % 21 % 21 %
TermL	protein:vir:78394 protein:vir:94991 protein:vir:102238	SETP3 KS7 PBI1	31 % 31 % 19 %
Ad1	protein:vir:94955 protein:vir:78383 protein:vir:95176	Xp15 SETP3 PA73	26 % 23 % 23 %
Hc1	protein:vir:97237 protein:vir:80382 protein:vir:79639	M6 BcepGomr TLS	24 % 18 % 19 %
Ne1	protein:vir:103280 protein:vir:102338 protein:vir:104347	JK06 phi CD119 RTP	29 % 31 % 24 %
Tc1	protein:vir:104348 protein:vir:94921 protein:vir:97211	RTP Xp15 M6	21 % 20 % 20 %