Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 11895-B1 | Genbank acc : NC_020843

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 196

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	133	lcl\|NC_020843.1_cdsid_YP_007673619.1	HHsearch (proba=100.00%)
Portal	137	lcl\|NC_020843.1_cdsid_YP_007673623.1	HHsearch (proba=100.00%)
TermL	148	lcl\|NC_020843.1_cdsid_YP_007673634.1	Blast (e-value=5e-58)
MTP	NOT FOUND
Sheath	108	lcl\|NC_020843.1_cdsid_YP_007673594.1	HHsearch (proba=100.00%)
Ad1	123	lcl\|NC_020843.1_cdsid_YP_007673609.1	HHsearch (proba=88.80%)
Hc1	28	lcl\|NC_020843.1_cdsid_YP_007673514.1	HHsearch (proba=80.33%)
Ne1	111	lcl\|NC_020843.1_cdsid_YP_007673597.1	HHsearch (proba=100.00%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad1<->Hc1	95	2
Ne1<->Hc1	83	2
Ne1<->Ad1	12	4

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:95258 protein:vir:10324 protein:vir:4902	Felix 01 VHML Sfi11	20 % 17 % 14 %
Portal	protein:vir:95254 protein:vir:108215 protein:vir:78161	Felix 01 Giles Min1	20 % 16 % 16 %
TermL	protein:vir:95253 protein:vir:93748 protein:vir:1235	Felix 01 55 phi ETA	35 % 17 % 17 %
Sheath	protein:vir:95263 protein:vir:80052 protein:vir:106730	Felix 01 B054 Bcep1	22 % 18 % 15 %
Ad1	protein:vir:104344 protein:vir:95259 protein:vir:79640	RTP Felix 01 TLS	15 % 15 % 15 %
Hc1	protein:vir:102607 protein:vir:105824 protein:vir:7992	Llij PMC Che8	10 % 10 % 10 %
Ne1	protein:vir:94069 protein:vir:99546 protein:vir:95260	OP2 BcepF1 Felix 01	21 % 19 % 18 %