Query lcl|NC_020843.1_cdsid_YP_007673514.1 [gene=VPHG_00028] [protein=hypothetical protein] [protein_id=YP_007673514.1] [location=16798..17676] Match_columns 292 No_of_seqs 74 out of 81 Neff 4.6 Searched_HMMs 1612 Date Thu Nov 7 16:14:48 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_28 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_28_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:102607 Length: 109 80.3 0.002 1.2E-06 35.4 -0.6 51 1-58 52-109 (109) 2 protein:vir:105824 Length: 109 80.3 0.002 1.2E-06 35.4 -0.6 51 1-58 52-109 (109) 3 protein:vir:7992 Length: 109 # 79.2 0.0021 1.3E-06 35.3 -0.8 51 1-58 52-109 (109) 4 protein:vir:4907 Length: 128 # 6.4 10 0.0065 15.0 7.0 112 1-163 1-128 (128) 5 protein:vir:99537 Length: 125 5.6 12 0.0075 14.6 8.0 111 1-163 1-125 (125) 6 protein:vir:3994 Length: 168 # 4.9 14 0.0086 14.3 4.1 76 213-292 1-109 (168) 7 protein:vir:98189 Length: 307 4.3 16 0.0098 14.0 5.9 148 100-292 1-195 (307) 8 protein:vir:1028 Length: 168 # 3.3 19 0.012 13.5 2.4 80 213-292 1-109 (168) 9 protein:vir:3618 Length: 129 # 1.9 36 0.022 12.1 7.1 112 1-163 2-129 (129) 10 protein:vir:9709 Length: 141 # 1.5 44 0.027 11.5 2.1 55 1-64 87-141 (141) No 1 >protein:vir:102607 Length: 109 # NCBI annotation: gp8 # Family: family:all:6972 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_655004;genbank:gi:109392194;genbank:GeneID:4157229 Probab=80.33 E-value=0.002 Score=35.43 Aligned_cols=51 Identities=10% Similarity=-0.022 Sum_probs=33.6 Q ss_pred CCCCCcchhhhhHHHHHHHHhcCCEEEEEeecCCCCCCccEEEEcCC-------CceEEEEeccc Q lcl|NC_020843. 1 MTKPKITEQEVAEVTSILFKHWGYDLYYECQLDIFGGRPDIIATRGA-------NWCAVIETKAK 58 (292) Q Consensus 1 m~~~kmkEtdLY~PVK~~le~~GYeVkgEV~~~~~~~~cDvVAvrg~-------e~~vIVELK~s 58 (292) |+...+-|-|||-|.-.= -.|+..+ .+++.-.|+||+|+. .|-+|+|||+. T Consensus 52 ~te~e~~dVDL~lPp~sp-----V~v~dR~--g~~~~vfdVV~~RD~t~GFHGW~PGlvaELrkv 109 (109) T protein:vir:10 52 IVETETIDVDLYLPPGSP-----VKVKDRV--GYGSDVFDVVAVRDWNMGFHGWAPGLVAELRKV 109 (109) T ss_pred cceeeeEEEEeecCCCCc-----hhhhhhc--ccCceeEEEEEeeeccCcccccCcceeeeeecC Confidence 888888889999886331 1223322 123344799999943 35678999998 No 2 >protein:vir:105824 Length: 109 # NCBI annotation: gp8 # Family: family:all:6972 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655769;genbank:gi:109522092;genbank:GeneID:4157632 Probab=80.33 E-value=0.002 Score=35.43 Aligned_cols=51 Identities=10% Similarity=-0.022 Sum_probs=33.6 Q ss_pred CCCCCcchhhhhHHHHHHHHhcCCEEEEEeecCCCCCCccEEEEcCC-------CceEEEEeccc Q lcl|NC_020843. 1 MTKPKITEQEVAEVTSILFKHWGYDLYYECQLDIFGGRPDIIATRGA-------NWCAVIETKAK 58 (292) Q Consensus 1 m~~~kmkEtdLY~PVK~~le~~GYeVkgEV~~~~~~~~cDvVAvrg~-------e~~vIVELK~s 58 (292) |+...+-|-|||-|.-.= -.|+..+ .+++.-.|+||+|+. .|-+|+|||+. T Consensus 52 ~te~e~~dVDL~lPp~sp-----V~v~dR~--g~~~~vfdVV~~RD~t~GFHGW~PGlvaELrkv 109 (109) T protein:vir:10 52 IVETETIDVDLYLPPGSP-----VKVKDRV--GYGSDVFDVVAVRDWNMGFHGWAPGLVAELRKV 109 (109) T ss_pred cceeeeEEEEeecCCCCc-----hhhhhhc--ccCceeEEEEEeeeccCcccccCcceeeeeecC Confidence 888888889999886331 1223322 123344799999943 35678999998 No 3 >protein:vir:7992 Length: 109 # NCBI annotation: gp8 # Family: family:all:6972 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817346;genbank:gi:29565774;genbank:GeneID:1259001 Probab=79.20 E-value=0.0021 Score=35.28 Aligned_cols=51 Identities=10% Similarity=-0.035 Sum_probs=33.8 Q ss_pred CCCCCcchhhhhHHHHHHHHhcCCEEEEEeecCCCCCCccEEEEcCC-------CceEEEEeccc Q lcl|NC_020843. 1 MTKPKITEQEVAEVTSILFKHWGYDLYYECQLDIFGGRPDIIATRGA-------NWCAVIETKAK 58 (292) Q Consensus 1 m~~~kmkEtdLY~PVK~~le~~GYeVkgEV~~~~~~~~cDvVAvrg~-------e~~vIVELK~s 58 (292) |+...+-|-|||-|.-.= -.|+..+ .+++.-.|+||+|+. .|-+|+|||+. T Consensus 52 ~te~e~~dVDL~lPp~sp-----V~v~~R~--g~~~~~fdVV~~RD~t~GFHGW~PGlvaELrkv 109 (109) T protein:vir:79 52 IVETETIDVDLYLPPGSP-----VKVKDRV--GYGPDVFDVVAVRDWNMGFHGWAPGLVAELRKV 109 (109) T ss_pred cceeeeEEEEeecCCCCc-----hhhhhhc--ccCCceEEEEEeeeccCcccccCcceeeeeecC Confidence 888888889999886331 1233333 123345799999943 35678999998 No 4 >protein:vir:4907 Length: 128 # NCBI annotation: gp128 # Family: family:all:504 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056685;genbank:gi:9635020;genbank:GeneID:1262660 Probab=6.40 E-value=10 Score=14.98 Aligned_cols=112 Identities=21% Similarity=0.220 Sum_probs=49.7 Q ss_pred CCCCCcchhhhhHHHHHHHHhcCCEEEEEeecCCCCCCccEEEEcCCCceEEE---------EeccccCHHHHHHHHHhh Q lcl|NC_020843. 1 MTKPKITEQEVAEVTSILFKHWGYDLYYECQLDIFGGRPDIIATRGANWCAVI---------ETKAKFSYDVLEQVCRWH 71 (292) Q Consensus 1 m~~~kmkEtdLY~PVK~~le~~GYeVkgEV~~~~~~~~cDvVAvrg~e~~vIV---------ELK~sfnL~Ll~QAv~R~ 71 (292) |..| +.+||.-+-+.|++.||+||..+. + .+..-|-|| +.|++++-+ T Consensus 1 m~sp---~q~L~~~~f~~l~~~g~~vyD~lP--------~----~~v~YPfV~ig~~~~~~~~tKt~~~g~--------- 56 (128) T protein:vir:49 1 MKQP---DQLLHDEMYRISCELGYNTYTYLP--------P----DDAAYPFVVMGETMVLPQSTKSHLIGR--------- 56 (128) T ss_pred CCch---HHHHHHHHHHHHHhcCCceecccC--------C----CCCCCCEEEeeeeeecCCccccccccE--------- Confidence 8888 699999999999999999999883 2 111123222 344444332 Q ss_pred hccCeeEEEeecCCCcccchhhhhhhhhhhhhccchhhhhhHHHHHHHHhCCceEEE-------EecCceeEEEecCCCC Q lcl|NC_020843. 72 MQKDYLSKSDWFQKKPEPQRLAVPNFLWIATGNSRQSKMHDMKKYLLDKFRIGWIDI-------ELEGEYGDWWWDNTQN 144 (292) Q Consensus 72 ~ltD~VYiAVp~~kk~~~~r~~~~~~i~~a~~~~~~~~~~~~~~~L~rrlGiGll~V-------~~~~~~v~~~~~p~~~ 144 (292) -.+.|-|+-..+ .|+ ...+..-.++..+ .+.+.. +++..-++..-|...+ T Consensus 57 ---v~ltihVW~~~~---~R~----------------ev~~i~~~i~~~l-~~~~~t~~y~f~~~i~~s~~~~~~D~st~ 113 (128) T protein:vir:49 57 ---LSSTVHVWGRVD---DRK----------------TLSDMAGQLMSSF-FAIKNIGGKQFSAEINQSSIDSNRDNSTD 113 (128) T ss_pred ---EEEEEEEEeCCC---Cch----------------hHHHHHHHHHHHh-hcccccCCeEEEEEeccceEEEEeecCCC Confidence 245555552211 111 1122222222221 222221 2222333333333332 Q ss_pred CCccchhhhhhhhcccccc Q lcl|NC_020843. 145 RYPDNSVDSYGDDTYGRIR 163 (292) Q Consensus 145 ~~rk~~~~~~~~~re~~~r 163 (292) .+ .....+.-+|..- T Consensus 114 ~~----L~Hgvl~l~f~~~ 128 (128) T protein:vir:49 114 EV----LYHFVIYTYFKFV 128 (128) T ss_pred cc----eeeEEEEEEEEeC Confidence 21 1122222222222 No 5 >protein:vir:99537 Length: 125 # NCBI annotation: putative protein # Family: family:all:504 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958542;genbank:gi:41179324;genbank:GeneID:2717175 Probab=5.59 E-value=12 Score=14.65 Aligned_cols=111 Identities=11% Similarity=0.057 Sum_probs=48.9 Q ss_pred CCCCCcchhhhhHHHHHHHHhcCCEEEEEeecCCCCCCccEEEEcCCCceEE-E--------EeccccCHHHHHHHHHhh Q lcl|NC_020843. 1 MTKPKITEQEVAEVTSILFKHWGYDLYYECQLDIFGGRPDIIATRGANWCAV-I--------ETKAKFSYDVLEQVCRWH 71 (292) Q Consensus 1 m~~~kmkEtdLY~PVK~~le~~GYeVkgEV~~~~~~~~cDvVAvrg~e~~vI-V--------ELK~sfnL~Ll~QAv~R~ 71 (292) |+. +.+||.=+-+.++++||+||.-+.. | +..-|-| | +.|++++-++ T Consensus 1 m~P----~q~Lfd~~f~~~~~lG~~vyD~lP~-------~-----~v~YPFVvig~~~~~~~~tKt~~~g~i-------- 56 (125) T protein:vir:99 1 MNP----YEELFKTVIEYCKKTGYPTFDYLPD-------E-----SQGYPFIMVGDQINNDIYAKDFVTGTS-------- 56 (125) T ss_pred Cch----hHHHHHHHHHHHHhcCCceeeecCC-------C-----CCCcCEEEEeeeeecCCCCccccceEE-------- Confidence 553 6899999999999999999998841 2 1112321 1 3344333211 Q ss_pred hccCeeEEEeecCCCcccchhhhhhhhhhhhhccchhhhhhHHHHHHHHhCCceEEEE-----ecCceeEEEecCCCCCC Q lcl|NC_020843. 72 MQKDYLSKSDWFQKKPEPQRLAVPNFLWIATGNSRQSKMHDMKKYLLDKFRIGWIDIE-----LEGEYGDWWWDNTQNRY 146 (292) Q Consensus 72 ~ltD~VYiAVp~~kk~~~~r~~~~~~i~~a~~~~~~~~~~~~~~~L~rrlGiGll~V~-----~~~~~v~~~~~p~~~~~ 146 (292) .+-|=|+-..+ .| ....+. ..-|.++..+.+..+ ++..-.++.-|..++.+ T Consensus 57 ----~lti~VWg~~~---~R----------------~~v~~i-~~~i~~~~~~~~~t~~y~~~~~~~~~qii~D~s~~t~ 112 (125) T protein:vir:99 57 ----NLTIHVFAEYN---YR----------------AEVATI-MEQIQQLIPKFITTNHYLFGLTGSSSNILGETADSIQ 112 (125) T ss_pred ----EEEEEEeeCcc---cc----------------hhHHHH-HHHHHHHhccceeccCcEEEeeeeeEEEeecCCCCce Confidence 22333332111 01 122222 222333445554432 12222334444333321 Q ss_pred ccchhhhhhhhcccccc Q lcl|NC_020843. 147 PDNSVDSYGDDTYGRIR 163 (292) Q Consensus 147 rk~~~~~~~~~re~~~r 163 (292) +....+.-+|..| T Consensus 113 ----L~Hg~l~l~F~ir 125 (125) T protein:vir:99 113 ----LQHGRLILDFNLR 125 (125) T ss_pred ----eeEEEEEEEEeeC Confidence 2222223333333 No 6 >protein:vir:3994 Length: 168 # NCBI annotation: unknown # Family: family:all:1029 # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116502;genbank:gi:14251135;genbank:GeneID:921309 Probab=4.88 E-value=14 Score=14.32 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=35.5 Q ss_pred ccchhH----HHHHHHHhccCCCh--------hhHHHHHHHHHhccCceeecCCCcccchhhhhhhhhhhhhccc----- Q lcl|NC_020843. 213 VTPFKL----TLKHTVEAMKPDTW--------YSSKDLLEALRESGHDHHYSKDATYKSSIGGWLIKFGYAESDG----- 275 (292) Q Consensus 213 ~~N~Yg----WFeRV~RGvY~Lt~--------~G~~eL~~~~~~~g~~~hy~~~~s~~s~~~~~l~~~~~~~~~~----- 275 (292) |.++.- |.+.|++-++.||. +|-..+.+=+....-..||++..+... .-|.+- +.-... T Consensus 1 M~~~~d~l~~~~~~v~kl~~~lt~e~kakIT~AGAkv~a~~L~~~T~~kHy~~rktg~~---~HLADs-I~~~~~niDg~ 76 (168) T protein:vir:39 1 MVSFYDAMQLIINQAESLSTKMTVEDKAEVTKAGAKVFEQALAYEVRNRHYRHRDTGED---PHLADS-IVMKNKNIDGV 76 (168) T ss_pred CccHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHHHHHhHHhcccCCCCCCC---ccchhh-eeecccccCcc Confidence 566665 99999999998854 677777774433333889999854332 112110 000000 Q ss_pred -------hhhhh---------hhhhcccccCCC Q lcl|NC_020843. 276 -------EWNKK---------FKKIVDSDDNQV 292 (292) Q Consensus 276 -------~w~~~---------~~~~~~~~~~~~ 292 (292) -|..+ +---|-.|+-.. T Consensus 77 ~dG~StVGw~~k~~~~~~~~a~iAr~lNDGTrf 109 (168) T protein:vir:39 77 KDGQSVVGWERSTEKGTHTKGYIANIINNGSRF 109 (168) T ss_pred cCCceeccccCccccccccchhheehhcccccc Confidence 01100 000000011000 No 7 >protein:vir:98189 Length: 307 # NCBI annotation: gp13 head completion # Family: family:all:1103 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239190;genbank:gi:66391665;genbank:GeneID:3416291 Probab=4.27 E-value=16 Score=13.99 Aligned_cols=148 Identities=11% Similarity=-0.010 Sum_probs=43.1 Q ss_pred hhhhccchhhhhhHHHHHHHHhCCceEEEEecCceeEEEecCCCCCCccchhhhhhhhccccccCCCCCcceEEeeeccc Q lcl|NC_020843. 100 IATGNSRQSKMHDMKKYLLDKFRIGWIDIELEGEYGDWWWDNTQNRYPDNSVDSYGDDTYGRIRIGNKIYDYRVMCEAGI 179 (292) Q Consensus 100 ~a~~~~~~~~~~~~~~~L~rrlGiGll~V~~~~~~v~~~~~p~~~~~rk~~~~~~~~~re~~~r~Gd~~g~~r~~l~TaY 179 (292) -+ .+.+.++.-..+||||-.+|.|++++..+.=.. ++-...+.+.+++ |..|+=+.=-+ T Consensus 1 m~-----t~s~~eLKdyiLRrLGAPvi~InVtd~Qi~DcI---------d~ALqly~EyHyd-------G~~k~y~~~~i 59 (307) T protein:vir:98 1 MI-----TNNPEQLKDEILRRLGAPIIKIEITQDQIYDCI---------QRALDLYAEYHYN-------GTNKSYIILTL 59 (307) T ss_pred CC-----cCCHHHHHHHHHHhcCCceeEEecCHHHHHHHH---------HHHHHHHHhhhcc-------cccceeEEEEe Confidence 11 123455667889999999999998653221000 0011111222211 11111000000 Q ss_pred chhHHHHHHHHHHhcChhHhhhc-----cCCCccccccccchhHHHHHHHHhccCCCh--hhHHHHHHHHHhccCceeec Q lcl|NC_020843. 180 QQGSRQTSHHIIERLLPEMQDSV-----AGVTSDKSNYVTPFKLTLKHTVEAMKPDTW--YSSKDLLEALRESGHDHHYS 252 (292) Q Consensus 180 Rq~al~~a~~L~~~l~p~~~~~~-----~gv~~a~~il~~N~YgWFeRV~RGvY~Lt~--~G~~eL~~~~~~~g~~~hy~ 252 (292) =|+=++-.. -++|+...+. +.++.-+++=.+--|-||.---- .+++ -|. .. T Consensus 60 ~~d~~~~~~----~~~~~~v~aVT~iirt~~g~~~s~dg~aty~w~~d~~~---g~~~~~~g~----~~----------- 117 (307) T protein:vir:98 60 GEDNPRNVF----DLSKEHIFAVTKVLRTNIGSLVSMDGTAVYPWFTDFLM---GLTGGSLGG----RC----------- 117 (307) T ss_pred cccccccce----ecCCchHhHHHHHhhcCccceecccccccccccCccee---ecCCccccc----cc----------- Confidence 000000000 0223222221 11111122212233555532111 1111 110 00 Q ss_pred CCCcccchhhhhhhhhhhhhc-cc---------------------------------------hhhhhhhhhcccccCCC Q lcl|NC_020843. 253 KDATYKSSIGGWLIKFGYAES-DG---------------------------------------EWNKKFKKIVDSDDNQV 292 (292) Q Consensus 253 ~~~s~~s~~~~~l~~~~~~~~-~~---------------------------------------~w~~~~~~~~~~~~~~~ 292 (292) .|..-|.+++-.+.||-.. -+ -||+.+.+.-++-.|++ T Consensus 118 --~s~~~g~n~~g~~l~yf~q~~~Y~~~l~dl~~p~~dy~yn~~~~~l~~~gn~~~~d~i~~e~~~ks~ld~~~~i~~~~ 195 (307) T protein:vir:98 118 --ASSVYGMNAYGADLGYFTQMMSYQRSMQELLAPLPDYWYNDDTGQFCVWGKVNNGDIIVIEVMVRSFVDVPSAVGSVA 195 (307) T ss_pred --ccceecCccccchHHHHHHHHHHHHHHHHhhccccceeecCcccceeeeeccccCceEEEEEeecccccchHHhcccc Confidence 0111112222222222210 00 12222222222222222 No 8 >protein:vir:1028 Length: 168 # NCBI annotation: Orf48 # Family: family:all:1029 # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076682;genbank:gi:13095791;genbank:GeneID:920342 Probab=3.25 E-value=19 Score=13.51 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=35.5 Q ss_pred ccchhH----HHHHHHHhccC--------CChhhHHHHHHHHHhccCceeecCCCcccc-hhhhhhhhhhh-----h--h Q lcl|NC_020843. 213 VTPFKL----TLKHTVEAMKP--------DTWYSSKDLLEALRESGHDHHYSKDATYKS-SIGGWLIKFGY-----A--E 272 (292) Q Consensus 213 ~~N~Yg----WFeRV~RGvY~--------Lt~~G~~eL~~~~~~~g~~~hy~~~~s~~s-~~~~~l~~~~~-----~--~ 272 (292) |.++.- |.+.|++--+. .|-+|...+.+=+....-+.||++..+... -|.-+.+-++. . . T Consensus 1 M~~~~d~l~~~~~~vekl~~~ls~eqkakITkAGAkv~~~~L~~~tk~kHy~~k~t~~~~HLaDsI~~~~~niDg~~dG~ 80 (168) T protein:vir:10 1 MVSFYDAMQLIVDRAEELSTKMSVEDKAEVTKAGAKVFEQALAYEVRNRHYRHRDTGEDPHLADSIVMKNKNIDGVKDGQ 80 (168) T ss_pred CCcHHHHHHHHHHHHHHhhcCCCHHHHHHHhHhhhHHHHHHHHHHhhHhhhccCCCCccchhhhhheecccccccccCCc Confidence 555555 88888885443 455677777766555555999998853321 11111111100 0 0 Q ss_pred ccchhhhhh---------hhhcccccCCC Q lcl|NC_020843. 273 SDGEWNKKF---------KKIVDSDDNQV 292 (292) Q Consensus 273 ~~~~w~~~~---------~~~~~~~~~~~ 292 (292) +.--|..++ ---|-.|+-.. T Consensus 81 s~VGf~~k~~~~~~~ka~iAr~lNDGTk~ 109 (168) T protein:vir:10 81 SVVGWERSTEKGTHTKGYIANIINNGSRF 109 (168) T ss_pred eeecccCccccccccchheeeeccccccc Confidence 001122210 00111222110 No 9 >protein:vir:3618 Length: 129 # NCBI annotation: ORF41 # Family: family:all:504 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112704;genbank:gi:13786572;genbank:GeneID:921070 Probab=1.87 E-value=36 Score=12.05 Aligned_cols=112 Identities=18% Similarity=0.180 Sum_probs=45.2 Q ss_pred CCCCCcchhhhhHHHHHHHHhcCCEEEEEeecCCCCCCccEEEEcCCCceEE-E--------EeccccCHHHHHHHHHhh Q lcl|NC_020843. 1 MTKPKITEQEVAEVTSILFKHWGYDLYYECQLDIFGGRPDIIATRGANWCAV-I--------ETKAKFSYDVLEQVCRWH 71 (292) Q Consensus 1 m~~~kmkEtdLY~PVK~~le~~GYeVkgEV~~~~~~~~cDvVAvrg~e~~vI-V--------ELK~sfnL~Ll~QAv~R~ 71 (292) |..| +.+||.=+=+.|+++||+||.-+.. |= ..-|-| | +.|++++-++ T Consensus 2 mksp---~qeL~d~~f~~l~~lG~~vyD~lP~-------~~-----v~YPfV~ig~~~~~~~~tKt~~~g~v-------- 58 (129) T protein:vir:36 2 IKTR---DQSIFDELFKRIQALGYTVYDYKPM-------NE-----VGYPFVELENTQTIHEANKTDIKGTV-------- 58 (129) T ss_pred CcCh---hHHHHHHHHHHHHhcCCeeeeccCC-------CC-----CCcCEEEeeeeeecCCccccccccEE-------- Confidence 5555 7999999999999999999998841 21 112321 1 3343333211 Q ss_pred hccCeeEEEeecCCCcccchhhhhhhhhhhhhccchhhhhhHHHHHHHHhCCceEEE-------EecCceeEEEecCCCC Q lcl|NC_020843. 72 MQKDYLSKSDWFQKKPEPQRLAVPNFLWIATGNSRQSKMHDMKKYLLDKFRIGWIDI-------ELEGEYGDWWWDNTQN 144 (292) Q Consensus 72 ~ltD~VYiAVp~~kk~~~~r~~~~~~i~~a~~~~~~~~~~~~~~~L~rrlGiGll~V-------~~~~~~v~~~~~p~~~ 144 (292) .+-|=|+-..+ .| ....+..-.++. .-++++.. +.....++..-|-.++ T Consensus 59 ----~ltihVW~~~~---~R----------------~~v~~i~~~i~~-~~~~~~~t~~y~~~~~~~~~~~q~~~D~st~ 114 (129) T protein:vir:36 59 ----SLSLSVWGLQK---KR----------------KEVSDMASNIFN-QALNISATDGYSWALNSQASTIQMLDDTTTN 114 (129) T ss_pred ----EEEEEEEeCCc---Cc----------------hhHHHHHHHHHH-HhcccccCCCeEEEEEeeeeeEEEeccCCCC Confidence 22233331111 01 111122222222 22222211 1111122333332222 Q ss_pred CCccchhhhhhhhcccccc Q lcl|NC_020843. 145 RYPDNSVDSYGDDTYGRIR 163 (292) Q Consensus 145 ~~rk~~~~~~~~~re~~~r 163 (292) . .+....+.-+|..| T Consensus 115 ~----~L~Hgii~l~f~~r 129 (129) T protein:vir:36 115 T----PLKRALINLEFRLR 129 (129) T ss_pred c----eeeEEEEEEEEEeC Confidence 1 12222233333333 No 10 >protein:vir:9709 Length: 141 # NCBI annotation: hypothetical protein # Family: family:all:2110 # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795471;genbank:gi:28876220;genbank:GeneID:1257764 Probab=1.49 E-value=44 Score=11.54 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=26.8 Q ss_pred CCCCCcchhhhhHHHHHHHHhcCCEEEEEeecCCCCCCccEEEEcCCCceEEEEeccccCHHHH Q lcl|NC_020843. 1 MTKPKITEQEVAEVTSILFKHWGYDLYYECQLDIFGGRPDIIATRGANWCAVIETKAKFSYDVL 64 (292) Q Consensus 1 m~~~kmkEtdLY~PVK~~le~~GYeVkgEV~~~~~~~~cDvVAvrg~e~~vIVELK~sfnL~Ll 64 (292) +++.......++.-|..-+.+.||+-|.... ++.-..+|+=+.+.. +.=.+.+.. T Consensus 87 W~~~~~~~e~i~~~Id~~M~~~gf~rY~~~~-~~~~~dpD~d~~~~~--------rRYr~~~~~ 141 (141) T protein:vir:97 87 WCKTASEADQINKCIDNILKQGGFERYTANE-KPRYKDSDIDLLMNV--------RKYRCFDFY 141 (141) T ss_pred eecChhHHHHHHHHHHHHHHhcCceeccccC-CCCCCccchhhhhhh--------hheeeeccC Confidence 5554333444999999999999999776432 000124554222210 010111110 Done!