Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Bcep1 | Genbank acc : NC_005263 | Aclame index mge :1599

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 71

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	13	lcl\|Aclame:protein:vir:106734\|NCBI_annot:gp13\|genbank:acc:NP_944321;genbank:gi:38638620;genbank:Gene	HHsearch (proba=100.00%)
Portal	18	lcl\|Aclame:protein:vir:106716\|NCBI_annot:gp18\|genbank:acc:NP_944326;genbank:gi:38638625;genbank:Gene	HHsearch (proba=100.00%)
TermL	19	lcl\|Aclame:protein:vir:106715\|NCBI_annot:gp19\|genbank:acc:NP_944327;genbank:gi:38638626;genbank:Gene	Blast (e-value=0)
MTP	NOT FOUND
Sheath	4	lcl\|Aclame:protein:vir:106730\|NCBI_annot:gp04\|genbank:acc:NP_944312;genbank:gi:38638611;genbank:Gene	HHsearch (proba=100.00%)
Ad1	8	lcl\|Aclame:protein:vir:106739\|NCBI_annot:gp08\|genbank:acc:NP_944316;genbank:gi:38638615;genbank:Gene	HHsearch (proba=100.00%)
Hc1	6	lcl\|Aclame:protein:vir:106729\|NCBI_annot:gp06\|genbank:acc:NP_944314;genbank:gi:38638613;genbank:Gene	HHsearch (proba=100.00%)
Ne1	7	lcl\|Aclame:protein:vir:106728\|NCBI_annot:gp07\|genbank:acc:NP_944315;genbank:gi:38638614;genbank:Gene	HHsearch (proba=100.00%)
Tc1	5	lcl\|Aclame:protein:vir:106763\|NCBI_annot:gp05\|genbank:acc:NP_944313;genbank:gi:38638612;genbank:Gene	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:106734 protein:vir:78558 protein:vir:101557	Bcep1 BcepNY3 Bcep43	100 % 99 % 97 %
Portal	protein:vir:106716 protein:vir:78589 protein:vir:101541	Bcep1 BcepNY3 Bcep43	100 % 96 % 95 %
TermL	protein:vir:78588 protein:vir:106715 protein:vir:101556	BcepNY3 Bcep1 Bcep43	100 % 100 % 96 %
Sheath	protein:vir:106730 protein:vir:101576 protein:vir:3636	Bcep1 Bcep43 Bcep781	100 % 98 % 97 %
Ad1	protein:vir:78595 protein:vir:106739 protein:vir:101559	BcepNY3 Bcep1 Bcep43	100 % 100 % 94 %
Hc1	protein:vir:106729 protein:vir:78609 protein:vir:101560	Bcep1 BcepNY3 Bcep43	100 % 98 % 97 %
Ne1	protein:vir:106728 protein:vir:78607 protein:vir:101563	Bcep1 BcepNY3 Bcep43	100 % 99 % 97 %
Tc1	protein:vir:106763 protein:vir:78612 protein:vir:101569	Bcep1 BcepNY3 Bcep43	100 % 99 % 96 %