Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : B054 | Genbank acc : NC_009813 | Aclame index mge :1876

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 80

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	8	lcl\|Aclame:protein:vir:80068\|NCBI_annot:gp8\|genbank:acc:YP_001468712;genbank:gi:157325292;genbank:Ge	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:80040\|NCBI_annot:gp3\|genbank:acc:YP_001468707;genbank:gi:157325287;genbank:Ge	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:80106\|NCBI_annot:TerL\|genbank:acc:YP_001468706;genbank:gi:157325286;genbank:G	Blast (e-value=0)
MTP	NOT FOUND
Sheath	14	lcl\|Aclame:protein:vir:80052\|NCBI_annot:gp14\|genbank:acc:YP_001468718;genbank:gi:157325298;genbank:G	HHsearch (proba=100.00%)
Ad1	10	lcl\|Aclame:protein:vir:80036\|NCBI_annot:gp10\|genbank:acc:YP_001468714;genbank:gi:157325294;genbank:G	HHsearch (proba=100.00%)
Hc1	12	lcl\|Aclame:protein:vir:80104\|NCBI_annot:gp12\|genbank:acc:YP_001468716;genbank:gi:157325296;genbank:G	HHsearch (proba=100.00%)
Ne1	11	lcl\|Aclame:protein:vir:80037\|NCBI_annot:gp11\|genbank:acc:YP_001468715;genbank:gi:157325295;genbank:G	HHsearch (proba=100.00%)
Tc1	13	lcl\|Aclame:protein:vir:80105\|NCBI_annot:gp13\|genbank:acc:YP_001468717;genbank:gi:157325297;genbank:G	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:80068 protein:vir:79642 protein:vir:107687	B054 TLS T1	100 % 21 % 21 %
Portal	protein:vir:80040 protein:vir:96068 protein:vir:107662	B054 F8 T1	100 % 22 % 22 %
TermL	protein:vir:80106 protein:vir:5248 protein:vir:3649	B054 Aaphi23 Bcep781	100 % 33 % 29 %
Sheath	protein:vir:80052 protein:vir:95263 protein:vir:5260	B054 Felix 01 Aaphi23	100 % 24 % 21 %
Ad1	protein:vir:80036 protein:vir:5256 protein:vir:79640	B054 Aaphi23 TLS	100 % 27 % 26 %
Hc1	protein:vir:80104 protein:vir:5258 protein:vir:95261	B054 Aaphi23 Felix 01	100 % 21 % 16 %
Ne1	protein:vir:80037 protein:vir:5257 protein:vir:107757	B054 Aaphi23 BcepB1A	100 % 33 % 25 %
Tc1	protein:vir:80105 protein:vir:5259 protein:vir:106763	B054 Aaphi23 Bcep1	100 % 14 % 12 %