Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : OP2 | Genbank acc : NC_007710 | Aclame index mge :1493

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 62

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	8	lcl\|Aclame:protein:vir:94070\|NCBI_annot:putative	HHsearch (proba=100.00%)
Portal	12	lcl\|Aclame:protein:vir:94049\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
TermL	13	lcl\|Aclame:protein:vir:94056\|NCBI_annot:putative	Blast (e-value=0)
MTP	NOT FOUND
Sheath	2	lcl\|Aclame:protein:vir:94073\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad1	6	lcl\|Aclame:protein:vir:94064\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	4	lcl\|Aclame:protein:vir:94034\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	5	lcl\|Aclame:protein:vir:94069\|NCBI_annot:putative	HHsearch (proba=100.00%)
Tc1	3	lcl\|Aclame:protein:vir:94061\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:94070 protein:vir:106734 protein:vir:78558	OP2 Bcep1 BcepNY3	100 % 49 % 48 %
Portal	protein:vir:94049 protein:vir:106716 protein:vir:3648	OP2 Bcep1 Bcep781	100 % 47 % 46 %
TermL	protein:vir:94056 protein:vir:78588 protein:vir:106715	OP2 BcepNY3 Bcep1	100 % 57 % 57 %
Sheath	protein:vir:94073 protein:vir:78611 protein:vir:101576	OP2 BcepNY3 Bcep43	100 % 49 % 49 %
Ad1	protein:vir:94064 protein:vir:101559 protein:vir:3639	OP2 Bcep43 Bcep781	100 % 37 % 37 %
Hc1	protein:vir:94034 protein:vir:78609 protein:vir:106729	OP2 BcepNY3 Bcep1	100 % 44 % 44 %
Ne1	protein:vir:94069 protein:vir:106728 protein:vir:101563	OP2 Bcep1 Bcep43	100 % 41 % 41 %
Tc1	protein:vir:94061 protein:vir:78612 protein:vir:106763	OP2 BcepNY3 Bcep1	100 % 44 % 44 %