Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : StB20 | Genbank acc : NC_019915

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 65

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	39	lcl\|NC_019915.1_cdsid_YP_007236660.1	HHsearch (proba=100.00%)
Portal	37	lcl\|NC_019915.1_cdsid_YP_007236658.1	HHsearch (proba=100.00%)
TermL	35	lcl\|NC_019915.1_cdsid_YP_007236656.1	Blast (e-value=1e-128)
MTP	44	lcl\|NC_019915.1_cdsid_YP_007236665.1	Blast (e-value=7e-26)
Sheath	NOT FOUND
Ad1	40	lcl\|NC_019915.1_cdsid_YP_007236661.1	HHsearch (proba=100.00%)
Hc1	41	lcl\|NC_019915.1_cdsid_YP_007236662.1	HHsearch (proba=100.00%)
Ne1	42	lcl\|NC_019915.1_cdsid_YP_007236663.1	HHsearch (proba=100.00%)
Tc1	43	lcl\|NC_019915.1_cdsid_YP_007236664.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:100172 protein:vir:100884 protein:vir:9704	phi AT3 Lc-Nu 315.2	42 % 40 % 38 %
Portal	protein:vir:9702 protein:vir:81095 protein:vir:79984	315.2 tp310-1 tp310-3	29 % 29 % 29 %
TermL	protein:vir:3867 protein:vir:9699 protein:vir:81099	A2 315.2 tp310-1	43 % 40 % 37 %
MTP	protein:vir:4706 protein:vir:81108 protein:vir:80010	phiPV83 tp310-1 tp310-3	33 % 31 % 31 %
Ad1	protein:vir:7410 protein:vir:93592 protein:vir:3992	P335 phi 4795 BK5-T	26 % 25 % 25 %
Hc1	protein:vir:81103 protein:vir:79989 protein:vir:98341	tp310-1 tp310-3 phiPVL(108)	31 % 31 % 31 %
Ne1	protein:vir:78644 protein:vir:96973 protein:vir:94419	tp310-2 42e 47	45 % 45 % 45 %
Tc1	protein:vir:101303 protein:vir:100675 protein:vir:9514	phiNM3 77 phiN315	41 % 41 % 41 %