Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : A2 | Genbank acc : NC_004112 | Aclame index mge :82

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 61

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	5	lcl\|Aclame:protein:vir:3870\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:3868\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:3867\|NCBI_annot:putative	Blast (e-value=0)
MTP	10	lcl\|Aclame:protein:vir:3875\|NCBI_annot:major	Blast (e-value=1e-116)
Sheath	NOT FOUND
Ad1	6	lcl\|Aclame:protein:vir:3871\|NCBI_annot:putative	HHsearch (proba=100.00%)
Hc1	7	lcl\|Aclame:protein:vir:3872\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ne1	8	lcl\|Aclame:protein:vir:3873\|NCBI_annot:putative	HHsearch (proba=100.00%)
Tc1	9	lcl\|Aclame:protein:vir:3874\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:3870 protein:vir:9704 protein:vir:100172	A2 315.2 phi AT3	100 % 45 % 39 %
Portal	protein:vir:3868 protein:vir:9702 protein:vir:98396	A2 315.2 phiPVL(108)	100 % 53 % 27 %
TermL	protein:vir:3867 protein:vir:9699 protein:vir:81099	A2 315.2 tp310-1	100 % 50 % 34 %
MTP	protein:vir:3875 protein:vir:9710 protein:vir:102037	A2 315.2 Fah	100 % 47 % 26 %
Ad1	protein:vir:3871 protein:vir:9706 protein:vir:1384	A2 315.2 phi3626	100 % 40 % 25 %
Hc1	protein:vir:3872 protein:vir:1890 protein:vir:4343	A2 HK022 D3	100 % 23 % 21 %
Ne1	protein:vir:3873 protein:vir:9708 protein:vir:81106	A2 315.2 tp310-1	100 % 40 % 29 %
Tc1	protein:vir:3874 protein:vir:9709 protein:vir:4705	A2 315.2 phiPV83	100 % 25 % 24 %