Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : P335 | Genbank acc : NC_004746 | Aclame index mge :146

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 49

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	35	lcl\|Aclame:protein:vir:7409\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	33	lcl\|Aclame:protein:vir:7407\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	31	lcl\|Aclame:protein:vir:7405\|NCBI_annot:putative	Blast (e-value=0)
MTP	40	lcl\|Aclame:protein:vir:7414\|NCBI_annot:major	Blast (e-value=1e-111)
Sheath	NOT FOUND
Ad1	36	lcl\|Aclame:protein:vir:7410\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	37	lcl\|Aclame:protein:vir:7411\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	38	lcl\|Aclame:protein:vir:7412\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	39	lcl\|Aclame:protein:vir:7413\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:7409 protein:vir:3991 protein:vir:1025	P335 BK5-T bIL286	100 % 97 % 96 %
Portal	protein:vir:3989 protein:vir:7407 protein:vir:1023	BK5-T P335 bIL286	100 % 100 % 100 %
TermL	protein:vir:7405 protein:vir:3986 protein:vir:1021	P335 BK5-T bIL286	100 % 73 % 73 %
MTP	protein:vir:7414 protein:vir:3996 protein:vir:1030	P335 BK5-T bIL286	100 % 99 % 99 %
Ad1	protein:vir:7410 protein:vir:1026 protein:vir:3992	P335 bIL286 BK5-T	100 % 98 % 94 %
Hc1	protein:vir:7411 protein:vir:3993 protein:vir:1027	P335 BK5-T bIL286	100 % 97 % 97 %
Ne1	protein:vir:7412 protein:vir:3994 protein:vir:1028	P335 BK5-T bIL286	100 % 96 % 93 %
Tc1	protein:vir:7413 protein:vir:1029 protein:vir:3995	P335 bIL286 BK5-T	100 % 98 % 95 %