Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phi AT3 | Genbank acc : NC_005893 | Aclame index mge :1524

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 55

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|Aclame:protein:vir:100172\|NCBI_annot:putative	HHsearch (proba=100.00%)
Portal	5	lcl\|Aclame:protein:vir:100187\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	3	lcl\|Aclame:protein:vir:100199\|NCBI_annot:putative	Blast (e-value=0)
MTP	12	lcl\|Aclame:protein:vir:100188\|NCBI_annot:putative	Blast (e-value=1e-121)
Sheath	NOT FOUND
Ad1	8	lcl\|Aclame:protein:vir:100211\|NCBI_annot:Hypothetical	HHsearch (proba=100.00%)
Hc1	9	lcl\|Aclame:protein:vir:100226\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ne1	10	lcl\|Aclame:protein:vir:100223\|NCBI_annot:putative	HHsearch (proba=100.00%)
Tc1	11	lcl\|Aclame:protein:vir:100200\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:100172 protein:vir:100884 protein:vir:3870	phi AT3 Lc-Nu A2	100 % 88 % 38 %
Portal	protein:vir:100187 protein:vir:100882 protein:vir:1082	phi AT3 Lc-Nu bIL309	100 % 97 % 29 %
TermL	protein:vir:100199 protein:vir:100880 protein:vir:3842	phi AT3 Lc-Nu phi adh	100 % 97 % 38 %
MTP	protein:vir:100188 protein:vir:100889 protein:vir:4957	phi AT3 Lc-Nu Sfi19	100 % 76 % 50 %
Ad1	protein:vir:100211 protein:vir:100885 protein:vir:4857	phi AT3 Lc-Nu DT1	100 % 80 % 23 %
Hc1	protein:vir:100226 protein:vir:100886 protein:vir:1086	phi AT3 Lc-Nu bIL309	100 % 96 % 45 %
Ne1	protein:vir:100223 protein:vir:100887 protein:vir:4833	phi AT3 Lc-Nu 7201	100 % 95 % 48 %
Tc1	protein:vir:100200 protein:vir:100888 protein:vir:4860	phi AT3 Lc-Nu DT1	100 % 78 % 35 %